Contact
Email:
jonas.denk@berkeley.edu
Projects and Research Interests
The focus of my work lies on pattern formation in non-equilibrium biological systems. In
particular, this includes nonlinear dynamics in reaction-diffusion systems and active
processes during bacterial cell division.
Projects in reaction diffusion systems:
- Pattern formation in the bacterial Min system (in collaboration with the lab of Petra
Schwille, MPI of Biochemistry, Munich) - Selection of patterns in mass conserving reaction-diffusion systems
Projects in active matter:
- Z-ring formation and self-assembly of FtsZ polymers during bacterial cell division
- Hydrodynamics of active matter and active turbulence
- Collective behavior of self-propelled particles for different interaction symmetries
Curriculum Vitae
- 09/2016-12/2016: Research stay as a visiting student in the group of Jeff Gore in the
Department of Physics of Living Systems at MIT, Cambridge, US. - since 09/2013: PhD Student
- Master’s degree in physics at LMU Munich
Master thesis: 'Formation of macroscopic order in systems of self-propelled particles for different collision rules' - 02/2011-04/2011: Research stay in the group of Carlos Acha in the low temperature lab at
UBA, Buenos Aires, Argentina - 09/2010 - 01/2011: Master studies of physics at the UBC Vancouver, Canada
- 07/2010: Bachelor's degree in physics at LMU Munich
Bachelor thesis: 'Hopping transport on a disordered lattice for low obstacle - 02/2010-03/2010: Research stay in the group of Magnetohydrodynamics at US Seville, Spain
- 09/2008 - 02/2009: Bachelor studies of physics at the US Seville, Spain
- 2007-2010: Bachelor studies of physics at the LMU Munich
- 2006-2007: Civilian service
- 2006: Abitur at Werner-von-Siemens-Gymnasium Regensburg
Publications
2021
-
Snowdrift game induces pattern formation in systems of self-propelled particles
Johanna Mayer* Michael Obermüller* Jonas Denk Erwin Frey [arXiv: 2104.09782]
2020
-
Pattern-induced local symmetry breaking in active matter systems
Jonas Denk Erwin Frey [arXiv:2005.12791]
2018
-
MinE conformational switching confers robustness on self-organized Min protein patterns
Jonas Denk* Simon Kretschmer* Jacob Halatek* Caroline Hartl Petra Schwille+ Erwin Frey+ [F1000Prime recommended] -
Ecological suicide in microbes
Christoph Ratzke* Jonas Denk* Jeff Gore [bioRxiv] [New York Times] [TheScienceBreaker]