Research Papers

2025

• Phase separation strength controls actin filament treadmilling

  Timon Nast-Kolb Beatrice Nettuno Davide Toffenetti Moritz Striebel Erwin Frey Andreas R. Bausch
  bioRXiv:2025.09.17.676269.

• Capillary wave formation in conserved active emulsions

  Florian Raßhofer* Simon Bauer* Alexander Ziepke Ivan Maryshev Erwin Frey
  accepted for publication in Physical Review Research.
  [arXiv:2505.20028]

• A temporal hierarchy determines epigenetic aging

  Matteo Ciarchi Benjamin David Simons Steffen Rulands
  bioRxiv:2025.08.13.669476.

• Acoustic signaling enables collective perception and control in active matter systems

  Alexander Ziepke Ivan Maryshev Igor S. Aranson Erwin Frey
  Phys. Rev. X 15, 031040.
  [arXiv:2410.02940]

• Delay-facilitated self-assembly in compartmentalized systems

  Severin Angerpointner* Richard Swiderski* Erwin Frey
  [arXiv:2508.03383]

• Emergent interactions lead to collective frustration in robotic matter

  Onurcan Bektas Adolfo Alsina Steffen Rulands
  [arXiv:2507.22148]

• Coarsening dynamics of chemotactic aggregates

  Henrik Weyer* David Muramatsu* Erwin Frey
  accepted for publication in Physical Review E.
  [arXiv:2409.20100]

• Collective Gene Expression Fluctuations Encode the Regulatory State of Cells

  Fabrizio Olmeda Yiteng Dang Fabian Rost Vincenzo Maria Schimmenti Ivan Di Terlizzi Steffen Rulands
  bioRxiv:2025.07.09.663203.

• Basic interactions responsible for thymus function explain convoluted medulla shape

  David Muramatsu* Henrik Weyer* Florian Gartner Erwin Frey
  PNAS 122 (25) e2415288122 (2025).
  [bioRxiv:2024.09.29.615586]

• Spatio-temporal patterns of active epigenetic turnover

  Fabrizio Olmeda Misha Gupta Onurcan Bektas Steffen Rulands
  [arXiv:2505.13216]

• Self-propagating wave drives noncanonical antidurotaxis of skull bones in vivo

  Yiteng Dang Johanna Lattner Adrian Lahola-Chomiak Diana Alves-Afonso Elke Ulbricht Anna V Taubenberger Steffen Rulands Jacqueline Tabler
  Nature Communications 17, 4330 (2025).
  [bioRxiv:2023.07.10.547677]

• Robust and resource-optimal dynamic pattern formation of Min proteins in vivo

  Ziyuan Ren* Henrik Weyer* Michael Sandler* Laeschkir Würthner* Haochen Fu Chanin B. Tangtartharakul Dongyang Li Cindy Sou Daniel Villarreal Judy E. Kim Erwin Frey+ Suckjoon Jun+
  Nature Physics (2025).
  [bioRxiv:2023.08.15.553443]

• Phase Separation on Deformable Membranes: interplay of mechanical coupling and dynamic surface geometry

  Antonia Winter* Yuhao Liu* Alexander Ziepke* George Dadunashvili Erwin Frey
  Editors' Suggestion.
  [Phys. Rev. E 111, 044405] [arXiv:2409.16049]

• Transcriptional landscapes underlying Notch-induced lineage conversion and plasticity of mammary basal cells

  Candice Merle Calvin Rodrigues Atefeh Pourkhalili Langeroudi Robin Journot Fabian Rost Yiteng Dang Steffen Rulands Silvia Fre
  EMBO J (2025).

• Navigating Ethical Challenges across Professions: Insights from an Ethics Lab on Patient-derived Organoids

  Jeanette Bresson Ladegaard Knox Mie Seest Dam Sara Green Daniel E. Stange Franziska Baenke Bon-Kyoung Koo Steffen Rulands Tim Schmäche Vivian Mittné Ivan Terlizzi Beatrix Jahnke Mette N. Svendsen
  Med, in press (2025).

• Light-induced cortical excitability reveals programmable shape dynamics in starfish oocytes

  Jinghui Liu Tom Burkart Alexander Ziepke John Reinhard Yu-Chen Chao Tzer Han Tan S. Zachary Swartz Erwin Frey Nikta Fakhri
  Nature Physics (2025).

• A transcriptional clock of the human pluripotency transition

  Louis Coussement* Matteo Ciarchi* Aljona Kolmogorova Tim De Meyer Steffen Rulands+ Wolf Reik+ Maria Rostovskaya+
  submitted for publication.
  [bioRxiv:2025.03.13.643129]

• Controlling noise with self-organizedresetting

  Felix J. Meigel Steffen Rulands
  Communications Physics volume 8, 63.
  [arXiv:2312.09307]

• A roadmap towards the synthesis of Life

  Christine Kriebisch ... Karen Alim ... Erwin Frey Ulrich Gerland ... Job Boekhoven
  Chem 11, March 13, 2025.
  [ChemRxiv:10.26434/chemrxiv-2024-tnx83]

• Availability versus carrying capacity: Phases of asymmetric exclusion processes competing for finite pools of resources

  Astik Haldar Parna Roy Erwin Frey Abhik Basu
  Phys. Rev. E 111, 014154.
  [arXiv:2408.01364]

• Stochastic bubble dynamics in phase-separated scalar active matter

  Mingqi Yan Erwin Frey Marcus Müller Stefan Klumpp
  submitted for publication.
  [arXiv:2501.11442]

• Emergent weight morphologies in deep neural networks

  Pascal de Jong* Felix Meige* Steffen Rulands
  submitted for publication.
  [arXiv:2501.05550]

• Universal quasi-particle kinetics control the cell death decision

  Felix Meige Lina Hellwig Harald Stachelscheid Philipp Mergenthaler Steffen Rulands
  submitted for publication.
  [arXiv:2501.04862]

• Collective dynamics of DNA methylation during ageing

  Aida Hashtroud Marc Bonder Oliver Stegle Ferdinand von Meyen Wolf Reik Steffen Rulands
  submitted for publication.
  [bioRxiv:2024.12.15.628564]

• Deciphering the Interface Laws of Turing Mixtures and Foams

  Henrik Weyer Tobias A. Roth Erwin Frey
  submitted for publication.
  [arXiv:2409.20070]

• Chemotaxis-induced phase separation

  Henrik Weyer* David Muramatsu* Erwin Frey
  submitted for publication.
  [arXiv:2409.20090]

• Pre-cancerous Niche Remodelling Dictates Nascent Tumour Survival

  G. Skrupskelyte J. E. Rojo Arias Y. Dang S. Han M. T. Bejar B. Colom J. C. Fowler P. H. Jones S. Rulands B. D. Simons M. P. Alcolea
  submitted for publication.
  [bioRxiv:2024.07.04.602022]

• Self-organising protein-lipid nanodomains (PLDs) enable cell-like membrane reshaping and scission

  A.B. Petrova T. Burkart A.F. Montanarella D. Sazcko-Brack L. Würthner A. Graw E. Frey C. Veigel
  submitted for publication.

• Morphology and Motility of Cells on Soft Substrates

  Andriy Goychuk David B. Brückner Andrew W. Holle Joachim P. Spatz Chase P. Broedersz Erwin Frey
  submitted for publication.
  [arXiv:1808.00314]

2024

• Dimensionality reduction in bulk-boundary reaction-diffusion systems

  Tom Burkart Benedikt Müller Erwin Frey
  Physical Review E 110, 034412 (2024).
  [arXiv:2405.08728]

• The role of mobility in epidemics near criticality

  Beatrice Nettuno* Davide Toffenetti* Christoph Metzl* Linus Weigand* Florian Raßhofer Richard Swiderski Erwin Frey
  Journal of Physics A: Mathematical and Theoretical 57, 405002 (2024).
  [arXiv:2402.06505]

• scEpiAge: an age predictor highlighting single-cell ageing heterogeneity in mouse blood

  Marc Jan Bonder Stephen J. Clark Felix Krueger Siyuan Luo João Agostinho de Sousa Aida M. Hashtroud Thomas M. Stubbs Anne-Katrien Stark Steffen Rulands Oliver Stegle Wolf Reik Ferdinand von Meyenn
  Nature Communications 15, 7567 (2024).

• Field theory of enzyme-substrate systems with restricted long-range interactions

  Fabrizio Olmeda Steffen Rulands
  Physical Review E 110, 024404 (2024).
  [arXiv:2401.09827]

• Supramolecular assemblies in active motor-filament systems: micelles, bilayers, and foams

  Filippo De Luca Ivan Maryshev Erwin Frey
  Physical Review X 14, 031031 (2024).
  [arXiv:2401.05070] [LMU Press Release (English)]

• Self-consistent sharp interface theory of active condensate dynamics

  Andriy Goychuk Leonardo Demarchi Ivan Maryshev Erwin Frey
  Physical Review Research 6, 033082 (2024).
  [arXiv:2401.17111]

• Clonal dynamics of surface-driven growing tissues

  Ruslan Mukhamadiarov Matteo Ciarchi Fabrizio Olmeda Steffen Rulands
  Physical Review E 109, 064407 (2024).
  [arXiv.2312.01923]

• Design principles for fast and efficient self-assembly processes

  Florian M. Gartner Erwin Frey
  Physical Review X 14, 021004 (2024).
  [arXiv:2403.00213] [LMU Press Release] [Synopsis in "Physics"] [News & Views article in "Nature"]

• Compartmentalization and synergy of osteoblasts drive bone formation in the regenerating fin

  N Cudak AC López-Delgado F Rost T Kurth M Lesche S Reinhardt A Dahl S Rulands F Knopf
  iScience 27, 108841 (2024).
  [bioRxiv:2023.06.04.543617]

• FOXO1-mediated lipid metabolism maintains mammalian embryos in dormancy

  Vera A. van der Weijden Maximilian Stötzel Dhanur P. Iyer Beatrix Fauler Elzbieta Gralinska Mohammed Shahraz David Meierhofer Martin Vingron Steffen Rulands Theodore Alexandrov Thorsten Mielke Aydan Bulut-Karslioglu
  Nature Cell Biology (2024).

• Long-range interactions and disorder facilitate pattern formation in spatial complex systems

  Fabrizio Olmeda Steffen Rulands
  submitted for publication.
  [arXiv:2303.12611]

• Single cell DNA methylation ageing in mouse blood

  Marc Jan Bonder Stephen J. Clark Felix Krueger Siyuan Luo João Agostinho de Sousa Aida M. Hashtroud Thomas M. Stubbs Anne-Katrien Stark Steffen Rulands Oliver Stegle Wolf Reik Ferdinand von Meyenn
  submitted for publication.
  [bioRxiv:2023.01.30.526343]

2023

• Coarsening and wavelength selection far from equilibrium: a unifying framework based on singular perturbation theory

  Henrik Weyer Fridtjof Brauns Erwin Frey
  Physical Review E 108, 064202 (2023).
  [arXiv:2203.03892]

• Hierarchical defect-induced condensation in active nematics

  Timo Krüger Ivan Maryshev Erwin Frey
  Soft Matter 19, 8954—8964 (2023).
  [arXiv:2307.05716]

• Redundancy and the role of protein copy numbers in the cell polarization machinery of budding yeast

  Fridtjof Brauns Leila Margarita Iñigo de la Cruz Karl-Gustav Daalman Ilse de Bruin Jacob Halatek Liedewij Laan Erwin Frey
  Nature Communications 14, 6504 (2023).
  [bioRxiv:2020.09.09.290510]

• Periodic temporal environmental variations induce coexistence in resource competition models

  Tom Burkart Jan Willeke Erwin Frey
  Physical Review E 108, 034404 (2023).
  [arXiv:2202.11635]

• Anomalous collective dynamics of autochemotactic populations

  Jasper van der Kolk* Florian Rasshofer* Richard Swiderski* Astik Haldar Abhik Basu Erwin Frey
  Physical Reviev Letters 131, 088201 (2023).
  [arXiv:2209.01047]

• Mechanochemical feedback loop drives persistent motion of liposomes

  Meifang Fu* Tom Burkart* Ivan Maryshev Henri G. Franquelim Adrián Merino-Salomón María Reverte-López Erwin Frey+ Petra Schwille+
  Nature Physics 19, 1211–1218 (2023).
  [LMU Press Release]

• Geometry-induced patterns through mechanochemical coupling

  Laeschkir Würthner* Andriy Goychuk* Erwin Frey
  Phys. Rev. E 108, 014404 (2023).
  [arXiv:2205.02820]

• Enzyme-enriched condensates show self-propulsion, positioning, and coexistence

  Leonardo Demarchi Andriy Goychuk Ivan Maryshev Erwin Frey
  Physical Reviev Letters 130, 128401 (2023).
  [Droplets Come to Life (Viewpoint Article by David Zwicker, Physics 16, 45)] [arXiv:2301.00392]

• Directing Min protein patterns with advective bulk flow

  Sabrina Meindlhumer* Fridtjof Brauns* Jernej Rudi Finžgar* Jacob Kerssemakers Cees Dekker Erwin Frey
  Nature Communications 14, 450 (2023).
  [biorXiv: 10.1101/2021.12.23.474007]

• Polarity and chirality control of an active fluid by passive nematic defects

  Alfredo Sciortino Lukas J. Neumann Timo Krüger Ivan Maryshev Tetsuhiko F. Teshima Bernhard Wolfrum Erwin Frey Andreas R. Bausch
  Nature Materials 22, 260–268 (2023).

2022

• Length regulation drives self-organization in filament-motor mixtures

  Moritz Striebel Fridtjof Brauns Erwin Frey
  Physical Review Letters 129, 238102 (2022).
  [arXiv:2109.05091]

• Multi-scale organization in communicating active matter

  Alexander Ziepke Ivan Maryshev Igor Aronson Erwin Frey
  Nature Communications 13, 6727 (2022).

• Geometry adaptation of protrusion and polarity dynamics in confined cell migration

  David B. Brückner Matthew Schmitt Alexandra Fink Johannes Flommersfeld Nicolas Arlt Edouard Hannezo Joachim O. Rädler Chase P. Broedersz
  Physical Review X 12, 031041 (2022).
  [arXiv:2106.01014]

• RNA Oligomerisation without Added Catalyst from 2 ′ ,3 ′ ‑Cyclic Nucleotides by Drying at Air‑Water Interfaces

  Avinash Vicholous Dass Sreekar Wunnava Juliette Langlais Beatriz von der Esch Maik Krusche Lennard Ufer Nico Chrisam Romeo Dubini Florian Gartner Severin Angerpointner Christina Dirscherl Petra Rovó Christof Mast Judit Šponer Christian Ochsenfeld Erwin Frey Dieter Braun
  ChemSystemsChem e202200026 (2022).
  [ChemRxiv:10.26434/chemrxiv-2022-zwh2t]

• Self-organization of plasticity and specialization in a primitively social insect

  Solenn Patalano*+ Adolfo Alsina* Carlos Gregorio-Rodríguez Martin Bachman Stephanie Dreier Irene Hernando-Herraez Paulin Nana Shankar Balasubramanian Seirian Sumner Wolf Reik+ Steffen Rulands+
  Cell Syst. 13(9), 768-779 (2022).

• Bridging scales in a multiscale pattern-forming system

  Laeschkir Würthner* Fridtjof Brauns* Grzegorz Pawlik Jacob Halatek Jacob Kerssemakers Cees Dekker Erwin Frey
  PNAS 119(33) e2206888119 (2022).
  [arXiv:2111.12043]

• Control of protein-based pattern formation via guiding cues

  Tom Burkart* Manon C. Wigbers* Laeschkir Würthner* Erwin Frey
  Nat. Rev. Phys. 4, 511–527 (2022).
  [bioRxiv: 10.1101/2022.02.11.480095]

• Metabolic enhancement of mammalian developmental pausing

  Vera A. van der Weijden Maximilian Stötzel Beatrix Fauler Dhanur Iyer Mohammed Shahraz David Meierhofer Steffen Rulands Theodore Alexandrov Thorsten Mielke Aydan Bulut-Karslioglu
  bioRxiv: 10.1101/2022.08.22.504730.

• Subdiffusive activity spreading in the diffusive epidemic process

  Borislav Polovnikov Patrick Wilke Erwin Frey
  Phys. Rev. Lett. 128, 078302 (2022).
  [arXiv:2105.14871]

• The time complexity of self-assembly

  Florian Gartner Isabella Graf Erwin Frey
  PNAS 119(4) e2116373119 (2022).
  [bioRxiv: 10.1101/2021.04.01.437956]

• Disentangling cadherin-mediated cell-cell interactions in collective cancer cell migration

  Themistoklis Zisis* David B. Brückner* Tom Brandstätter Joseph d'Alessandro Angelika Vollmar Chase P. Broedersz Stefan Zahler
  Biophysical Journal 121, 1–17 (2022).
  [biorXiv: 10.1101/2021.05.07.442718]

2021

• Snowdrift game induces pattern formation in systems of self-propelled particles

  Johanna Mayer* Michael Obermüller* Jonas Denk Erwin Frey
  Phys. Rev. E 104, 044408 (2021).
  [arXiv: 2104.09782]

• Single-cell growth inference of Corynebacterium glutamicum reveals asymptotically linear growth

  Fabian Meyer Marc Bramkamp Chase P. Broedersz
  eLife 10, e70106 (2021).
  [bioRxiv:10.1101/2020.05.25.115055]

• Surface tension induced budding drives alveologenesis in human mammary gland organoids

  Pablo A. Fernández* Benedikt Buchmann* Andriy Goychuk* Lisa Engelbrecht Marion Raich Christina Scheel Erwin Frey+ Andreas R. Bausch+
  Nature Physics 17, 1130–1136 (2021).

• Theory of Active Intracellular Transport by DNA-relaying

  Christian Hanauer Silke Bergeler Erwin Frey Chase P. Broedersz
  Phys. Rev. Lett. 127, 138101 (2021).
  [arXiv:2101.02640]

• A diffusiophoretic mechanism for ATP-driven transport without motor proteins

  Beatrice Ramm* Andriy Goychuk* Alena Khmelinskaia Philipp Blumhardt Kristina Ganzinger Erwin Frey+ Petra Schwille+
  Nature Physics 17, 850–858 (2021).
  [bioRxiv:10.1101/2020.05.01.072744]

• Bulk-surface coupling identifies the mechanistic connection between Min-protein patterns in vivo and in vitro

  Fridtjof Brauns* Grzegorz Pawlik* Jacob Halatek* Jacob W.J. Kerssemakers Erwin Frey+ Cees Dekker+
  Nature Communications 12, 3312 (2021).
  [bioRxiv:10.1101/2020.03.01.971952]

• A hierarchy of protein patterns robustly decodes cell shape information

  Manon C. Wigbers* Tzer Han Tan* Fridtjof Brauns S. Zachary Swartz Erwin Frey+ Nikta Fakhri+
  Nature Physics 17, 578–584 (2021).

• Dynamics of the Bacillus subtilis Min system

  Helge Feddersen Laeschkir Würthner Erwin Frey Marc Bramkamp
  ASM Journal, mBio, 12, 2 (2021).
  [bioRxiv:10.1101/2020.04.29.068676]

• Learning the distribution of single-cell chromosome conformations in bacteria reveals emergent order across genomic scales

  Jacqueline Janssen Muriel C.F. van Teeseling Martin Thanbichler Chase P. Broedersz
  Nature Communications 12, 1963 (2021).
  [arXiv:2002.03880]

• Tissue flow through pores: a computational study

  Felix Kempf Andriy Goychuk Erwin Frey
  submitted for publication.
  [bioRxiv: 10.1101/2021.03.25.436985]

• Microphase separation in active filament systems is maintained by cyclic dynamics of cluster size and order

  Lorenz Huber* Timo Krüger* Erwin Frey
  Phys. Rev. Research 3, 013280 (2021).
  [arXiv:2007.00517]

• PomX, a ParA/MinD ATPase activating protein, is a triple regulator of cell division in Myxococcus xanthus

  Dominik Schumacher Andrea Harms Silke Bergeler Erwin Frey Lotte Søgaard-Andersen
  eLife 10, e66160 (2021).
  [bioRxiv:10.1101/2020.12.14.422651]

• Diffusive coupling of two well-mixed compartments elucidates elementary principles of protein-based pattern formation

  Fridtjof Brauns Jacob Halatek Erwin Frey
  Phys. Rev. Research 3, 013258 (2021).
  [arXiv:2010.15095]

• Wavelength selection by interrupted coarsening in reaction-diffusion systems

  Fridtjof Brauns* Henrik Weyer* Jacob Halatek Junghoon Yoon Erwin Frey
  Phys. Rev. Lett. 126, 104101 (2021).
  [arXiv:2005.01495]

• Learning the dynamics of cell-cell interactions in confined cell migration

  David B. Brückner Nicolas Arlt Alexandra Fink Pierre Ronceray Joachim O. Rädler Chase P. Broedersz
  PNAS 118 (7), e2016602118 (2021).
  [arXiv:2008.03978]

• Optically Transparent Vertical Silicon Nanowire Arrays for Live-Cell Imaging

  A. Kosloff A. W. Holle J. Young M. A. George O. Heifler A. Goychuk E. Frey J. P. Spatz F. Patolsky R. Elnathan N. H. Voelcker
  Journal of Nanobiotechnology 19, 51 (2021).

• Drag-induced directional switching of the kinesin-5 Cin8 revealed from cluster-motility analysis

  Himanshu Pandey Emanuel Reithmann Alina Goldstein-Levetin Jawdat Al-Bassam Erwin Frey Larisa Gheber
  Science Advances 7, eabc1687 (2021).
  [bioRxiv:10.1101/2020.01.24.918714]

2020

• Topological phase transition in coupled rock-paper-scissor cycles

  Johannes Knebel Philipp M. Geiger Erwin Frey
  Phys. Rev. Lett. 125, 258301 (2020).
  [Physics Today 74,3,16 (2021)] [Physics Today: 10.1063/PT.6.1.20210128a] [arXiv:2009.01780]

• Pattern-induced local symmetry breaking in active matter systems

  Jonas Denk Erwin Frey
  PNAS 117, 31623-31630 (2020).
  [arXiv:2005.12791]

• Phase-space geometry of mass-conserving reaction-diffusion dynamics

  Fridtjof Brauns* Jacob Halatek* Erwin Frey
  Phys. Rev. X 10, 041036 (2020).
  [arXiv:1812.08684]

• Learning the Non-Equilibrium Dynamics of Brownian Movies

  Federico S. Gnesotto Grzegorz Gradziuk Pierre Ronceray Chase P. Broedersz
  Nature Communications 11, 5378 (2020).
  [arXiv:2001.08642]

• Cell-Based Strain Remodeling of a Nonfibrous Matrix as an Organizing Principle for Vasculogenesis

  Daniel Rüdiger Kerstin Kick Andriy Goychuk Angelika M. Vollmar Erwin Frey Stefan Zahler
  Cell Reports 32, 108015 (2020).
  [bioRxiv:10.1101/816496]

• Quasi-periodic migration of single cells on short microlanes

  Fang Zhou Sophia A. Schaffer Christoph Schreiber Felix J. Segerer Andriy Goychuk Erwin Frey Joachim O. Rädler
  PLOS ONE 15, e0230679 (2020).
  [bioRxiv:10.1101/809939]

• Inferring the Dynamics of Underdamped Stochastic Systems

  David B. Brückner Pierre Ronceray Chase P. Broedersz
  Physical Review Letters 125, 058103 (2020),
  featured as Editors' suggestion.
  [arXiv:2002.06680]

• Flow Induced Symmetry Breaking in a Conceptual Polarity Model

  Manon C. Wigbers Fridtjof Brauns Ching Yee Leung Erwin Frey
  Cells 9, 1524 (2020),
  featured in the special issue "Symmetry Breaking in Cells and Tissues".
  [arXiv:2005.09573]

• Stochastic Yield Catastrophes and Robustness in Self-Assembly

  Florian M. Gartner* Isabella R. Graf* Patrick Wilke* Philipp M. Geiger Erwin Frey
  eLife 9, e51020 (2020).
  [arXiv:1905.09912] [bioRxiv:10.1101/660340]

• Molecular underpinnings of cytoskeletal crosstalk

  Angela Oberhofer* Emanuel Reithmann* Peter Spieler Willi L. Stepp Dennis Zimmermann Bettina Schmid Erwin Frey+ Zeynep Ökten+
  PNAS 117, 3944-3952 (2020).

• Pattern localization to a domain edge

  Manon Wigbers Fridtjof Brauns Tobias Hermann Erwin Frey
  Physical Review E 101, 022414 (2020),
  featured as Editors' suggestion.
  [arXiv:1908.07309]

• Disentangling the Behavioural Variability of Confined Cell Migration

  David B. Brückner Alexandra Fink Joachim O. Rädler Chase P. Broedersz
  Journal of the Royal Society Interface 17, 20190689 (2020).
  [arXiv:1910.02815] [bioRxiv:10.1101/797555]

• Geometric cues stabilise long-axis polarisation of PAR protein patterns in C. elegans

  Raphaela Geßele Jacob Halatek Laeschkir Würthner Erwin Frey
  Nature Communications 11, 539 (2020).
  [bioRxiv:10.1101/451880]

• A mechanistic view of collective filament motion in active nematic networks

  Moritz Striebel* Isabella R. Graf* Erwin Frey
  Biophysical Journal 118, 313-324 (2020).
  [bioRxiv:10.1101/732909]

• Lattice Kinetic Monte-Carlo Method for Simulating Chromosomal Dynamics and other (Non-)Equilibrium Bio-Assemblies

  Christiaan A. Miermans Chase P. Broedersz
  Soft Matter 16, 544-556 (2020).

2019

• Area and geometry dependence of cell migration in asymmetric two-state micropatterns

  Alexandra Fink David Brückner Christoph Schreiber Peter Röttgermann Chase Broedersz Joachim Rädler
  Biophysical Journal, 118, 552-564 (2019).
  [bioRxiv:10.1101/815472]

• Bridging the gap between single cell migration and collective dynamics

  Florian Thüroff* Andriy Goychuk* Matthias Reiter Erwin Frey
  eLife 6, e46842 (2019).
  [bioRxiv:10.1101/548677]

• Design of biochemical pattern forming systems from minimal motifs

  Philipp Glock Fridtjof Brauns Jacob Halatek Erwin Frey Petra Schwille
  eLife 8, e48646 (2019).
  [bioRxiv:10.1101/666362]

• Cooperation in Microbial Populations: Theory and Experimental Model Systems

  Jonas B. Cremer Anna Melbinger Karl Wienand Tania Henriquez Heinrich Jung Erwin Frey
  Journal of Molecular Biology 431, 4599-4644 (2019).
  [arXiv:1909.11338]

• Mesoscopic non-equilibrium measures can reveal intrinsic features of the active driving

  Federica Mura Grzegorz Gradziuk Chase P. Broedersz
  Soft Matter, 15, 8067-8076 (2019).
  [arXiv:1905.13663]

• Protein recruitment through indirect mechanochemical interactions

  Andriy Goychuk Erwin Frey
  Physical Review Letters 123, 178101 (2019).
  [arXiv:1910.00977]

• Active Matter Invasion

  Felix Kempf Romain Mueller Erwin Frey Julia Yeomans Amin Doostmohammadi
  Soft Matter 15, 7538–7546 (2019).
  [arXiv:1908.00768]

• Can a flux-based mechanism explain positioning of protein clusters in three-dimensional cell geometry?

  Matthias Kober Silke Bergeler Erwin Frey
  Biophysical Journal 117, 420-428 (2019).
  [arXiv:1812.05780] [bioRxiv:10.1101/496364]

• Reconstitution reveals how myosin VI self-organises to generate a dynamic mechanism of membrane sculpting

  Benoit Rogez* Laeschkir Würthner* Anastasia B. Petrova Dario Saczko-Brack Maria-Ana Huergo Christopher Batters Erwin Frey+ Claudia Veigel+
  Nature Communications 10, 3305 (2019).

• Non-equilibrium dynamics of isostatic spring networks

  Federico S. Gnesotto Benedikt M. Remlein Chase P. Broedersz
  Physical Review E 100 , 013002 (2019).
  [arXiv:1809.04639]

• Scaling behavior of non-equilibrium measures in internally driven elastic assemblies

  Grzegorz Gradziuk Federica Mura Chase P. Broedersz
  Physical Review E 99, 052406 (2019).
  [arXiv:1901.03132]

• Stochastic nonlinear dynamics of confined cell migration in two-state systems

  David Brückner Alexandra Fink Christoph Schreiber Peter Röttgermann Joachim Rädler Chase Broedersz
  Nature Physics 15, 595–601 (2019).
  [Nature Physics News & Views] [LMU Press Release]

• Fiber plucking by molecular motors yields large emergent contractility in stiff biopolymer networks

  Pierre Ronceray Chase P. Broedersz Martin Lenz
  Soft Matter 15, 1481-1487 (2019).
  [arXiv:1805.04624]

• Coevolution of nodes and links: diversity driven coexistence in cyclic competition of three species

  Kevin E. Bassler Erwin Frey R.K.P. Zia
  Physical Review E 99, 022309 (2019).
  [arXiv:1808.05875]

2018

• Delays in fitness adjustment can lead to coexistence of hierarchically interacting species

  Marianne Bauer Erwin Frey
  Phys. Rev. Lett. 121 (26), 268101 (2018).
  [arXiv:1805.08730]

• Topologically robust zero-sum games and Pfaffian orientation – How network topology determines the long-time behavior of the antisymmetric Lotka-Volterra equation

  P. M. Geiger J. Knebel E. Frey
  Phys. Rev. E 98 (6), 062316 (2018).
  [arXiv:1806.07339]

• Stress-dependent amplification of active forces in nonlinear elastic media

  Pierre Ronceray Chase P. Broedersz Martin Lenz
  Soft Matter 15, 331-338 (2019).
  [arXiv:1805.02779]

• Crowding and pausing strongly affect dynamics of kinesin-1 motors along microtubules

  Matthias Rank Erwin Frey
  Biophys. J. 115 (6), 1068–1081 (2018).
  [arXiv:1805.03432] [PMC 6139881]

• Bacterial chromosome organization by collective dynamics of SMC condensins

  Christiaan A. Miermans Chase P. Broedersz
  J. R. Soc. Interface 15, 20180495 (2018).
  [arXiv:1805.03983]

• Thermophoretic forces on a mesoscopic scale

  Jérôme Burelbach David B. Brückner Daan Frenkel Erika Eiser
  Soft Matter 14, 7446-7454 (2018).

• Two-Species Active Transport along Cylindrical Biofilaments is Limited by Emergent Topological Hindrance

  Patrick Wilke Emanuel Reithmann Erwin Frey
  Phys. Rev. X 8 (3), 031063 (2018).
  [arXiv:1807.02410]

• Eco-Evolutionary Dynamics of a Population with Randomly Switching Carrying Capacity

  Karl Wienand Erwin Frey Mauro Mobilia
  J. R. Soc. Interface 15 (145), 20180343 (2018).
  [arXiv:1712.07939]

• Regulation of Pom cluster dynamics in Myxococcus xanthus

  Silke Bergeler Erwin Frey
  PLoS Comput Biol 14 (8), e1006358 (2018).
  [arXiv:1801.06133]

• Delayed adaptation in stochastic metapopulation models

  Marianne Bauer Erwin Frey
  EPL 122 (6), 68002 (2018).

• Non-equilibrium scaling behaviour in driven soft biological assemblies

  Federica Mura Grzegorz Gradziuk Chase P. Broedersz
  Phys. Rev. Lett. 121 (3), 038002 (2018).
  [arXiv:1803.02797]

• Rethinking Pattern Formation in Reaction-Diffusion Systems

  Jacob Halatek Erwin Frey
  Nature Physics 14, 507-514 (2018).
  [F1000 Article Recommendation]

• Self-organized system size oscillation of a stochastic lattice-gas model

  Mareike Bojer* Isabella R. Graf* Erwin Frey
  Phys. Rev. E 98 (1), 012410 (2018).
  [arXiv:1803.03942]

• Emergence of coexisting ordered states in active matter systems

  Lorenz Huber* Ryo Suzuki* Timo Krüger* Erwin Frey+ Andreas Bausch+
  Science 361, 255-258 (2018).
  [LMU News]

• Capping protein-controlled actin polymerization shapes lipid membranes

  Katharina Dürre Felix C. Keber Philip Bleicher Fridtjof Brauns Christian J. Cyron Jan Faix Andreas R. Bausch
  Nature Communications 9, 1630 (2018).

• CsrA and its regulators control the time-point of ColicinE2 release in Escherichia coli

  Alexandra Götz* Matthias Lechner* Andreas Mader Benedikt von Bronk Erwin Frey+ Madeleine Opitz+
  Scientific Reports 8, 6537 (2018).
  [arXiv:1805.02068]

• MinE conformational switching confers robustness on self-organized Min protein patterns

  Jonas Denk* Simon Kretschmer* Jacob Halatek* Caroline Hartl Petra Schwille+ Erwin Frey+
  PNAS 115 (18), 4553-4558 (2018).
  [F1000Prime recommended]

• Multiple scales in metapopulations of public good producers

  Marianne Bauer Erwin Frey
  Phys. Rev. E 97 (4), 042307 (2018).
  [arXiv:1802.02402]

• Self-organization principles of intracellular pattern formation

  Jacob Halatek Fridtjof Brauns Erwin Frey
  Phil. Trans. R. Soc. B 373, 20170107 (2018).
  [arXiv:1802.07169]

• Limited resources induce bistability in microtubule length regulation

  Matthias Rank* Aniruddha Mitra* Louis Reese Stefan Diez+ Erwin Frey+
  Phys. Rev. Lett. 120 (14), 148101 (2018).
  [arXiv:1802.09265]

• Interactions mediated by a public good transiently increase cooperativity in growing Pseudomonas putida metapopulations

  Felix Becker* Karl Wienand* Matthias Lechner Erwin Frey+ Heinrich Jung+
  Scientific Reports 8, 4093 (2018).
  [arXiv:1803.04179]

• Ecological suicide in microbes

  Christoph Ratzke* Jonas Denk* Jeff Gore
  Nature Ecology & Evolution 2, 867-872 (2018).
  [bioRxiv] [New York Times] [TheScienceBreaker]

• Guiding 3D cell migration in deformed synthetic hydrogel microstructures

  Miriam Dietrich Hugo Le Roy David B. Brückner Hanna Engelke Roman Zantl Joachim O. Rädler Chase P. Broedersz
  Soft Matter 14, 2816-2826 (2018).

• Looping and clustering model for the organization of partitioning proteins on the bacterial genome

  Jean-Charles Walter Jérôme Dorignac Frédéric Geniet John Palmeri Andrea Parmeggiani Ned S. Wingreen Chase P. Broedersz
  New J. Phys. 20, 035002 (2018).
  [arXiv:1707.01373]

• Mean-field equation for a stochastic many-particle model of quorum-sensing microbial populations

  Erwin Frey Johannes Knebel
  submitted for publication.
  [arXiv:1802.05307]

• Disentangling Entanglement in Biopolymer Solutions

  Philipp Lang Erwin Frey
  Nature Communications 9, 494 (2018).
  [arXiv:1802.03702]

• Protein Pattern Formation

  Erwin Frey Jacob Halatek Simon Kretschmer Petra Schwille
  Physics of Biological Membranes (2018), Springer Verlag.
  [arXiv:1801.01365]

• Cell contraction induces long-ranged stress stiffening in the extracellular matrix

  Yu Long Han Pierre Ronceray Guoqiang Xu Andrea Malandrino Martin Lenz Chase P. Broedersz+ Ming Guo+
  PNAS 115 (16), 4075-4080 (2018).
  [arXiv:1709.00793]

2017

• Evolution of a Fluctuating Population in Randomly Switching Environment

  Karl Wienand Erwin Frey Mauro Mobilia
  Phys. Rev. Lett. 119 (12), 158301 (2017).
  [arXiv:1708.08841]

• Exploiting ecology in drug pulse sequences in favour of population reduction

  M. Bauer I. R. Graf V. Ngampruetikorn G. Stephens E. Frey
  PLOS Computational Biology 13 (9): e1005747 (2017).
  [arXiv:1802.02408]

• Nonequilibrium dynamics of probe filaments in actin-myosin networks

  J. Gladrow C.P. Broedersz+ C.F. Schmidt+
  Phys. Rev. E 96, 022408 (2017).
  [arXiv:1704.06243 ]

• Ecological feedback in quorum-sensing microbial populations can induce heterogeneous production of autoinducers

  Matthias Bauer Johannes Knebel Matthias Lechner Peter Pickl Erwin Frey
  eLife 6, e25773 (2017).
  [arXiv:1707.07959]

• The PomXYZ Proteins Self-Organize on the Bacterial Nucleoid to Stimulate Cell Division

  Dominik Schumacher Silke Bergeler Andrea Harms Janet Vonck Sabrina Huneke-Vogt Erwin Frey Lotte Sogaard-Andersen
  Developmental Cell 41 (3), 299-314 (2017).
  [arXiv:1801.09549]

• Physical limits to biomechanical sensing in disordered fibre networks

  F Beroz LM Jawerth S Münster DA Weitz CP Broedersz+ NS Wingreen+
  Nat. Commun. 8, 16096 (2017).

• Generic transport mechanisms for molecular traffic in cellular protrusions

  Isabella R.Graf Erwin Frey
  Phys. Rev. Lett. 118 (12), 128101 (2017).
  [arXiv:1703.02536]

• Master equations and the theory of stochastic path integrals

  Markus F. Weber Erwin Frey
  Rep. Prog. Phys. 80 (4), 046601 (2017).
  [arXiv:1609.02849]

2016

• Hierarchical Post-transcriptional Regulation of Colicin E2 Expression in Escherichia Coli

  Matthias Lechner Mathias Schwarz Madeleine Opitz Erwin Frey
  PLoS Comput Biol 12 (12), e1005243 (2016).

• Nonequilibrium diffusion and capture mechanism ensures tip-localization of regulating proteins on dynamic filaments

  Emanuel Reithmann Louis Reese Erwin Frey
  Phys. Rev. Lett. 117 (7), 078102 (2016).
  [arXiv:1607.05304]

• Broken Detailed Balance of Filament Dynamics in Active Networks

  J. Gladrow N. Fakhri F.C. MacKintosh C.F. Schmidt C.P. Broedersz
  Phys. Rev. Lett. 116 (24), 248301 (2016).

• Multistability and dynamic transitions of intracellular Min protein patterns

  Fabai Wu* Jacob Halatek* Matthias Reiter Enzo Kingma Erwin Frey+ Cees Dekker+
  Mol. Syst. Biol. 12 (6), 873 (2016).

• Breaking detailed balance at the mesoscale in active biological systems

  C Battle* CP Broedersz* N Fakhri* VF Geyer J Howard CF Schmidt FC MacKintosh
  Science 352, 604-607 (2016).

• Fiber networks amplify active stress

  P Ronceray CP Broedersz+ M Lenz+
  PNAS 113 (11), 2827–2832 (2016).

• Fluid dynamics: In pursuit of turbulence

  Johannes Knebel Markus F. Weber Erwin Frey
  Nat. Phys. 12, 204-205 (2016).

• Active Curved Polymers form Vortex Patterns on Membranes

  Jonas Denk Lorenz Huber Emanuel Reithmann Erwin Frey
  Phys. Rev. Lett 116 (17), 178301 (2016).
  [arXiv:1602.08976]

• Magnetic Propulsion of Microswimmers with DNA-Based Flagellar Bundles

  Alexander M. Maier Cornelius Weig Peter Oswald Erwin Frey Peer Fischer Tim Liedl
  Nano Lett. 16 (2), 906-910 (2016).

• Binary Mixtures of Particles with Different Diffusivities Demix

  Simon Weber Christoph Weber Erwin Frey
  Phys. Rev. Lett. 116 (5), 058301 (2016).
  [arXiv:1505.00525]

• Multi-scale strain-stiffening of semiflexible bundle networks

  IK Piechocka KA Jansen CP Broedersz NA Kurniawan FC MacKintosh GH Koenderink
  Soft Matter Advance Article 12 (7), 2145-2156 (2016).

• Geometry induced protein pattern formation

  Dominik Thalmeier Jacob Halatek Erwin Frey
  PNAS 113 (3), 548-553 (2016).

2015

• Traffic Dynamic Instability

  Louis Reese Anna Melbinger Erwin Frey
  submitted for publication.
  [arXiv:1505.01219]

• A new class of turbulence in active fluids

  Vasil Bratanov Frank Jenko Erwin Frey
  PNAS 112 (49), 15048-15053 (2015).

• Focus on soft mesoscopics: physics for biology at a mesoscopic scale

  Klaus Kroy Erwin Frey
  New J. Phys. 17, 110203 (2015).

• Soft viscoelastic properties of nuclear actin age oocytes due to gravitational creep

  Marina Feric C.P. Broedersz C.P. Brangwynne
  Scientific Reports 5 ,16607 (2015).

• Polar Pattern Formation in Driven Filament Systems Require Non-Binary Particle Collisions

  Ryo Suzuki Christoph A. Weber Erwin Frey Andreas Bausch
  Nature Physics 11, 839–843 (2015).

• Random Bursts Determine Dynamics of Active Filaments

  Christoph A. Weber Ryo Suzuki Volker Schaller Igor S. Aranson Andreas R. Bausch Erwin Frey
  PNAS 112 (34), 10703-10707 (2015).

• Non-selective evolution of growing populations

  Karl Wienand Matthias Lechner Felix Becker Heinrich Jung Erwin Frey
  PLoS ONE 10(8), e0134300 (2015).
  [arXiv:1507.07774]

• Statistical mechanics of the US Supreme Court

  E.D. Lee C.P. Broedersz W. Bialek
  J. Stat. Phys. 1, 0022-4715 (2015).

• The Emergence of Cooperation from a Single Mutant during Microbial Life Cycles

  Anna Melbinger Jonas Cremer Erwin Frey
  J. R. Soc. Interface 12 (108), 20150171 (2015).
  [arXiv:1505.03558]

• Emergence and Persistence of Collective Cell Migration on Small Circular Micropatterns

  Felix J. Segerer* Florian Thüroff* Alicia Piera Alberola Erwin Frey+ Joachim O. Rädler+
  Phys. Rev. Lett. 114, 228102 (2015).
  [arXiv:1505.04643]

• Evolutionary games of condensates in coupled birth-death processes

  Johannes Knebel Markus F. Weber Torben Krüger Erwin Frey
  Nature Communications 6, 6977 (2015).
  [arXiv:1504.07816]

• How turbulence regulates biodiversity in systems with cyclic competition

  Daniel Groselj Frank Jenko Erwin Frey
  Phys. Rev. E 91, 033009 (2015).
  [arXiv:1411.4245]

• Amount of Colicin release in Escherichia coli is regulated by lysis gene expression of the Colicin E2 operon

  Andreas Mader Benedikt von Bronk Benedikt Ewald Sara Kesel Karin Schnetz Erwin Frey Madeleine Opitz
  PLoS ONE 10(3), e0119124 (2015).

• Quantifying protein diffusion and capture on filaments

  Emanuel Reithmann Louis Reese Erwin Frey
  Biophys. J. 108, 787-790 (2015).
  [arXiv:1503.00878]

2014

• Effective two-dimensional model does not account for geometry sensing by self-organized proteins patterns

  Jacob Halatek Erwin Frey
  PNAS 111 (18), E1817 (2014).
  [arxiv:1403.5934]

• Numerical treatment of the Boltzmann equation for self-propelled particle systems

  Florian Thüroff Christoph Weber Erwin Frey
  Phys. Rev. X 4, 041030 (2014).
  [arXiv:1411.4544]

• Molecular Mechanisms for Microtubule Length Regulation by Kinesin-8 and XMAP215 Proteins

  Louis Reese Anna Melbinger Erwin Frey
  Interface Focus 4 (6), 20140031 (2014).
  [arxiv:1405.5847]

• Periodic vs. intermittent adaptive cycles in quasispecies co-evolution

  Alexander Seeholzer Erwin Frey Benedikt Obermayer
  Phys. Rev. Lett. 113, 128101 (2014) .
  [arxiv:1408.6345]

• Specialization and Bet Hedging in Heterogeneous Populations

  Steffen Rulands David Jahn Erwin Frey
  Phys. Rev. Lett. 113, 108102 (2014).
  [arxiv:1408.4912]

• Flow and diffusion in channel-guided cell migration

  Anna-Kristina Marel Matthias Zorn Christoph Klingner Roland Wedlich-Söldner Erwin Frey Joachim O Rädler
  Biophys. J. 107 (5), 1054–1064 (2014).

• Chemical warfare and survival strategies in bacterial range expansions

  Markus Weber Gabriele Poxleitner Elke Hebisch Erwin Frey Madeleine Opitz
  J. R. Soc. Interface 11 (96), 20140172 (2014).
  [arxiv:1405.5025]

• Defect-Mediated Phase Transitions in Active Soft Matter

  Christoph A. Weber Christopher Bock Erwin Frey
  Phys. Rev. Lett. 112, 168301 (2014).
  [arxiv:1404.1619]

• Range Expansion of Heterogeneous Populations

  Matthias Reiter* Steffen Rulands* Erwin Frey
  Phys. Rev. Lett. 112, 148103 (2014).
  [arxiv:1403.6333]

• Dynamics of a Semiflexible Polymer or Polymer Ring in Shear Flow

  Philipp Lang Benedikt Obermayer Erwin Frey
  Phys. Rev. E 89, 022606 (2014).
  [arxiv:1402.3441]

• Mobility-Dependent Selection of Competing Strategy Associations

  Alexander Dobrinevski Mikko Alava Tobias Reichenbach Erwin Frey
  Phys. Rev. E 89, 012721 (2014).
  [arxiv:1401.1755]

• Single Cell Kinetics of Phenotypic Switching in the Arabinose Utilization System of E. coli

  J. Megerle G. Fritz S. A. Westermayer D. Brick R. Herrmann K. Jung J. O. Rädler U. Gerland
  PLoS ONE 9(2), e89532 (2014).

2013

• High Variation of Fluorescence Protein Maturation Times in Closely Related Escherichia Coli Strains

  Elke Hebisch Johannes Knebel Janek Landsberg Erwin Frey Madeleine Leisner
  PLoS ONE 8(10), e0075991 (2013).

• Understanding Collective Dynamics of Soft Active Colloids by Binary Scattering

  Timo Hanke Christoph A. Weber Erwin Frey
  Phys. Rev. E 88, 052309 (2013).
  [arxiv:1310.6214]

• GDI-Mediated Cell Polarization in Yeast Provides Precise Spatial and Temporal Control of Cdc42 Signaling

  Ben Klünder Tina Freisinger Roland Wedlich-Söldner Erwin Frey
  PLoS Comput. Biol. 9(12), e1003396 (2013).

• Critical Assessment of the Boltzmann Approach to Active Systems

  Florian Thüroff Christoph A. Weber Erwin Frey
  Phys. Rev. Lett. 111, 190601 (2013).
  [arxiv:1310.5234]

• The paradox of dual roles in the RNA World: Resolving the conflict between stable folding and templating ability

  Nikola Ivica Benedikt Obermayer Gregory W. Campbell Sudha Rajamani Ulrich Gerland Irene A. Chen
  J. Mol. Evol. 77(3), 55-63 (2013).

• Immediate and heterogeneous response of the LiaFSR two-component system of Bacillus subtilis to the peptide antibiotic bacitracin

  Sara Kesel Andreas Mader Carolin Höfler Thorsten Mascher Madeleine Leisner
  PLoS ONE 8(1), e53457 (2013).

• Optimization of collective enzyme activity via spatial localization

  Alexander Buchner Filipe Tostevin Florian Hinzpeter Ulrich Gerland
  J. Chem. Phys. 139, 135101 (2013).

• Language change in a multiple group society

  Cristina-Maria Pop Erwin Frey
  Phys. Rev. E 88, 022814 (2013).
  [arxiv:1309.2677]

• Biological Signal Processing with a Genetic Toggle Switch

  Patrick Hillenbrand Georg Fritz Ulrich Gerland
  PLoS ONE 8(7), e68345 (2013).

• Fluctuation Effects in the Pair Annihilation Process with Levy Dynamics

  Ingo Homrighausen Anton A. Winkler Erwin Frey
  Phys. Rev. E 88, 012111 (2013).
  [arxiv:1306.5476]

• Clustering and optimal arrangement of enzymes in reaction-diffusion systems

  Alexander Buchner Filipe Tostevin Ulrich Gerland
  Phys. Rev. Lett. 110, 208104 (2013).

• Global attractors and extinction dynamics of cyclically competing species

  Steffen Rulands Alejandro Zielinski Erwin Frey
  Phys. Rev. E 87, 052710 (2013).
  [arxiv:1305.0119]

• Long-range ordering of vibrated polar disks

  Christoph A. Weber Timo Hanke Julien Deseigne Sébastien Léonard Olivier Dauchot Erwin Frey Hugue Chaté
  Phys. Rev. Lett. 110, 208001 (2013).
  [arxiv:1304.4760]

• Escalation of Polymerization in a Thermal Gradient

  Christof B. Mast Severin Schink Ulrich Gerland Dieter Braun
  PNAS 2013 110 (20) 8030-8035.

• Establishment of a robust single axis of cell polarity by coupling of multiple positive feedback loops

  Tina Freisinger Ben Klünder Jared Johnson Nikola Müller Garwin Pichler Gisela Beck Michael Costanzo Charles Boone Richard A. Cerione Erwin Frey Roland Wedlich-Söldner
  Nature Communications 4, 1807 (2013).

• Role of particle conservation in self-propelled particle systems

  Christoph A. Weber Florian Thüroff Erwin Frey
  New J. Phys. 15, 045014 (2013).
  [arxiv:1301.7701]

• Coexistence and survival in conservative Lotka-Volterra networks

  Johannes Knebel Torben Krüger Markus F. Weber Erwin Frey
  Phys. Rev. Lett. 110, 168106 (2013).
  [arxiv:1303.7116]

• Mobility, fitness collection, and the breakdown of cooperation

  Anatolij Gelimson Jonas Cremer Erwin Frey
  Phys. Rev. E 87, 042711 (2013).
  [arXiv:1301.7682]

• Towards a unified physical model of nucleosome patterns flanking transcription start sites

  Wolfram Möbius Brendan Osberg Alexander M. Tsankov Oliver J. Rando Ulrich Gerland
  PNAS 110, 5719-5724 (2013).

• Cooperative effects enhance the transport properties of molecular spider teams

  Matthias Rank Louis Reese Erwin Frey
  Phys. Rev. E 87, 032706 (2013).
  [arxiv:1302.1853]

• Simulation of stochastic network dynamics via entropic matching

  Tiago Ramalho Marco Selig Ulrich Gerland Torsten A. Enßlin
  Phys. Rev. E 87, 022719 (2013).
  [arxiv:1209.3700]

• Long-Range and Many-Body Effects in Coagulation Processes

  Anton A. Winkler Erwin Frey
  Phys. Rev. E 87, 022136 (2013) .
  [arxiv:1302.0481]

• Stability of localized wave fronts in bistable systems

  Steffen Rulands Ben Klünder Erwin Frey
  Phys. Rev. Lett. 110, 038102 (2013).
  [arxiv:1212.1036]

• Cascade of Reduced Speed and Accuracy After Errors in Enzyme-Free Copying of Nucleic Acid Sequences

  Kevin Leu Eric Kervio Benedikt Obermayer Rebecca Turk-MacLeod Caterina Yuan Jesus-Mario Luevano Eric Chen Ulrich Gerland Clemens Richert Irene A. Chen
  J. Am. Chem. Soc., 135 (1), 354–366 (2013).

2012

• Nucleation-induced transition to collective motion in active systems

  Christoph Weber Volker Schaller Andreas R. Bausch Erwin Frey
  Phys. Rev. E 86, 030901(R) (2012).
  [arxiv:1208.5448]

• Deactivation of the E. coli pH stress sensor CadC by cadaverine

  Ina Haneburger Georg Fritz Nicole Jurkschat Larissa Tetsch Andreas Eichinger Arne Skerra Ulrich Gerland Kirsten Jung
  J. Mol. Biol 424 , 15-27 (2012).

• Microtubule Length Regulation by Molecular Motors

  Anna Melbinger Louis Reese Erwin Frey
  Phys. Rev. Lett. 108, 258104 (2012).
  [arXiv:1204.5655]

• Highly Canalized MinD Transfer and MinE Sequestration Explain the Origin of Robust MinCDE-Protein Dynamics

  Jacob Halatek Erwin Frey
  Cell Reports 1 (6), 741-752 (2012).

• Extinction in neutrally stable stochastic Lotka-Volterra models

  A. Dobrinevski E. Frey
  Phys. Rev. E 85, 051903 (2012).
  [arXiv:1001.5235]

• Growth dynamics and the evolution of cooperation in microbial populations

  Jonas Cremer Anna Melbinger Erwin Frey
  Scientific Reports 2, 281 (2012).
  [arXiv:1203.5863]

• Validity of the law of mass action in three-dimensional coagulation processes

  Anton Winkler Erwin Frey
  Phys. Rev. Lett. 108, 108301 (2012).
  [arXiv:1202.0182]

• Simulating self-organized molecular patterns using interaction-site models

  M. Balbás Gambra C. Rohr K. Gruber B. A. Hermann T. Franosch
  Eur. Phys. J. E (35), 1 (2012).

• Discrimination of Escherichia coli strains using Glycan Cantilever Array Sensors

  Andreas Mader Kathrin Grubert Ricardo Castelli Bianca A. Hermann Peter H. Seeberger Joachim O. Rädler Madeleine Leisner
  Nano Lett. 12 (1), 420–423 (2012).

• Quantitative analysis of the nanopore translocation dynamics of simple structured polynucleotides

  Severin Schink Sephan Renner Karen Alim Vera Arnaut Friedrich C. Simmel Ulrich Gerland
  Biophys. J. 102 (1), 85–95 (2012).

• MicroRNA Circuits for Transcriptional Logic

  Madeleine Leisner L. Bleris J. Lohmueller Z. Xie K. Benenson
  Methods Mol Biol. 813, 169-186 (2012).

2011

• Frozen steady states in active systems

  Volker Schaller Christoph Weber Benjamin Hammerich Erwin Frey Andreas R. Bausch
  PNAS 108 (48), 19183-19188 (2011).
  [arXiv:1109.2764]

• Evolutionary and Population Dynamics: A Coupled Approach

  Jonas Cremer Anna Melbinger Erwin Frey
  Phys. Rev. E 84 (5), 051921 (2011).
  [arXiv:1108.2604]

• Target search on a dynamic DNA molecule

  Thomas Schötz Richard A. Neher Ulrich Gerland
  Phys. Rev. E 84 (5), 051911 (2011).
  [arXiv:1109.3211]

• The mode of cell wall growth in selected archaea is similar to the general mode of cell wall growth in bacteria as revealed by fluorescent dye analysis

  Wirth R Bellack A Bertl M Bilek Y Heimerl T Herzog B Leisner M Probst A Rachel R Sarbu C Schopf S Wanner G
  Environmental Microbiology 77 (5), 1556-1562 (2011).

• Range Expansion with Mutation and Selection: Dynamical Phase Transition in a Two-Species Eden Model

  Jan-Timm Kuhr Madeleine Leisner Erwin Frey
  New J. Phys. 13, 113013 (2011).
  [arXiv:1110.2639]

• Social dynamics with peer support on heterogeneous networks: the "mafia model"

  Marta Balbás Gambra Erwin Frey
  Eur. Phys. J. B. 83 (4), 507-518 (2011).
  [arXiv:1108.4585]

• Chemical cell trapping in controlled alternating gradient fields

  B. Meier A. Zielinski C. Weber D. Arcizet S. Youssef T. Franosch J. O. Rädler D. Heinrich
  PNAS 108 (28), 11417-11422 (2011).

• Crowding of molecular motors determines microtubule depolymerization

  Louis Reese Anna Melbinger Erwin Frey
  Biophys. J. 101 (9), 2190-2200 (2011).
  [arXiv:1109.1155]

• The prebiotic evolutionary advantage of transferring genetic information from RNA to DNA

  Kevin Leu Benedikt Obermayer Sudha Rajamani Ulrich Gerland Irene A. Chen
  Nucl. Acids Res. 39, 8135-8147 (2011).

• Physical limits on cooperative protein-DNA binding and the kinetics of combinatorial transcription regulation

  Nico Geisel Ulrich Gerland
  Biophys. J. 101 (7), 1569-1579 (2011).
  [arXiv:1109.3351]

• Current reversal and exclusion processes with history-dependent random walks

  Johannes H.P. Schulz Anatoly Kolomeisky Erwin Frey
  EPL 95 (3), 30004 (2011).
  [arXiv:1104.5378]

• Emergence of information transmission in a prebiotic RNA reactor

  Benedikt Obermayer Hubert Krammer Dieter Braun Ulrich Gerland
  Phys. Rev. Lett 107 (1), 018101 (2011).
  [arXiv:1105.3758]

• Driven Transport on Parallel Lanes with Particle Exclusion and Obstruction

  Anna Melbinger Tobias Reichenbach Thomas Franosch Erwin Frey
  Phys. Rev. E 83 (3), 031923 (2011).
  [arXiv:1002.3766]

• Polar Pattern Formation: Hydrodynamic coupling of driven filaments

  Volker Schaller Christoph Weber Erwin Frey Andreas Bausch
  Soft Matter 7 (7), 3213 - 3218 (2011).

• Highly accelerated simulations of glassy dynamics using GPUs: Caveats on limited floating-point precision

  Peter H. Colberg Felix Höfling
  Comp. Phys. Comm. 182 (5), 1120-1129 (2011).
  [arXiv:0912.3824] [HALMD package]

• Anomalous transport resolved in space and time by fluorescence correlation spectroscopy

  Felix Höfling Karl-Ulrich Bamberg Thomas Franosch
  Soft Matter 7 (4), 1358-1363 (2011).
  [arXiv:1003.3762]

• Longitudinal Response of Confined Semiflexible Polymers

  Florian Thüroff Benedikt Obermayer Erwin Frey
  Phys. Rev. E 83, 021802 (2011).
  [arXiv:1009.2251]

• Reply to Comment on "Bulk-Driven Nonequilibrium Phase Transitions in a Mesoscopic Ring"

  H. Hinsch L. Reese E. Frey
  Phys. Rev. Lett. 106, 079602 (2011).

• Three-fold way to extinction in populations of cyclically competing species

  Steffen Rulands Tobias Reichenbach Erwin Frey
  J. Stat. Mech. 2011, L01003 (2011).
  [arXiv:1005.5704]

• Space-resolved dynamics of a tracer in a disordered solid

  Thomas Franosch Markus Spanner Teresa Bauer Gerd E. Schröder-Turk Felix Höfling
  J. Non-Cryst. Solids 357 (2), 472-478 (2011).
  [arXiv:1004.3670]

• Non-Affine Shear Modulus in Entangled Networks of Semiflexible Polymers

  H. Hinsch E. Frey
  Submitted for publication.
  [arXiv:0907.1875]

2010

• Inference with minimal Gibbs free energy in information field theory

  Torsten Enßlin Cornelius Weig
  Phys. Rev. E 82 (5), 051112 (2010).
  [arXiv:1004.2868]

• Localization phenomena in models of ion-conducting glass formers

  Jürgen Horbach Thomas Voigtmann Felix Höfling Thomas Franosch
  Eur. Phys. J. Spec. Top. 189 (1), 141-145 (2010).

• Quantitative predictions on auxin-induced polar distribution of PIN proteins during vein formation in leaves

  Karen Alim Erwin Frey
  Eur. Phys. J. E 3 (2), 165–173 (2010).
  [arXiv:1005.3768]

• Unconventional Salt Trend from Soft to Stiff in Single Neurofilament Biopolymers

  Roy Beck Joanna Deek Myung Chul Choi Taiji Ikawa Osamu Watanabe Erwin Frey Philip Pincus Cyrus R. Safinya
  Langmuir 26, 18595–18599 (2010).

• The Localization Transition of the Two-Dimensional Lorentz Model

  Teresa Bauer Felix Höfling Tobias Munk Erwin Frey Thomas Franosch
  Eur. Phys. J-Spec 189 (1), 103–118 (2010).
  [arXiv:1003.2918]

• Molecular self-organization: predicting the pattern diversity and lowest energy state of competing ordering motifs

  B. A. Hermann C. Rohr M. Balbás Gambra A. Malecki M. S. Malarek E. Frey T. Franosch
  Phys. Rev. B 82, 165451 (2010).

• Sequence-dependent unfolding kinetics of DNA hairpins studied by nanopore force spectroscopy

  Stephan Renner Andrey Bessonov Ulrich Gerland Friedrich C. Simmel
  J. Phys. Condens. Matter 22 (45), 454119 (2010).

• Evolutionary game theory in growing populations

  Anna Melbinger Jonas Cremer Erwin Frey
  Phys. Rev. Lett 105 (17), 178101 (2010).
  [arXiv:1010.3845]

• Error thresholds for self- and cross-specific enzymatic replication

  Benedikt Obermayer Erwin Frey
  J. Theor. Biol. 267 (4), 653–662 (2010).
  [arXiv:1003.1304]

• Persistent memory for a Brownian walker in a random array of obstacles

  Thomas Franosch Felix Höfling Teresa Bauer Erwin Frey
  Chem. Phys. 375 (2), 540–547 (2010).
  [arXiv:1004.2807]

• Arrangement of Annexin A2 tetramer and its impact on the structure and diffusivity of supported lipid bilayers

  Kirstin Fritz Georg Fritz Barbara Windschiegl Claudia Steinem Bert Nickel
  Soft Matter 6, 4084–4094 (2010).
  [selected for Virtual Journal of Biological Physics Research]

• Rationally designed logic integration of regulatory signals in mammalian cells

  M. Leisner L. Bleris J. Lohmueller Z. Xie K. Benenson
  Nat. Nanotechnol. 5, 666–670 (2010).

• Polar patterns of driven filaments

  Volker Schaller Christoph Weber Christine Semmrich Erwin Frey Andreas R. Bausch
  Nature 467, 73–77 (2010).

• Quantitative test of the barrier nucleosome model for statistical positioning of nucleosomes up- and downstream of transcription start sites

  W. Möbius U. Gerland
  PLoS Comput. Biol. 6 (8), e1000891 (2010).
  [arXiv:1009.0169]

• Bayesian analysis of spatially distorted cosmic signals from Poissonian data

  Cornelius Weig Torsten Enßlin
  MNRAS 409 (4), 1393-1411 (2010).
  [arXiv:1003.1311]

• Confinement induces conformational transition of semiflexible polymer rings to figure eight form

  Katja Ostermeir Karen Alim Erwin Frey
  Soft Matter 6 (15), 3467–3471 (2010).
  [arXiv:1004.4574]

• Coexistence in a One-Dimensional Cyclic Dominance Process

  Anton Winkler Tobias Reichenbach Erwin Frey
  Phys. Rev. E 81 (6), 060901(R) (2010).
  [selected for Virtual Journal of Biological Physics Research] [arXiv:1006.0383]

• Entropy production of cyclic population dynamics

  Benjamin Andrae Jonas Cremer Tobias Reichenbach Erwin Frey
  Phys. Rev. Lett. 104 (21), 218102 (2010).
  [arXiv:1005.0865]

• Buckling of stiff polymer rings in weak spherical confinement

  Katja Ostermeir Karen Alim Erwin Frey
  Phys. Rev. E 81 (6), 061802 (2010).
  [selected for Virtual Journal of Biological Physics Research] [arXiv:1003.4267]

• Excluded Volume Effects on Semiflexible Ring Polymers

  F. Drube K. Alim G. Witz G. Dietler E. Frey
  Nano Lett. 10 (4), 1445-1449 (2010).
  [arXiv:0906.3991]

• Predictive Modeling of non-viral Gene Transfer

  Gerlinde Schwake Simon Youssef Jan-Timm Kuhr Sebastian Gude Maria Pamela David Eduardo Mendoza Erwin Frey Joachim O. Rädler
  Biotechnol. Bioeng. 105 (4), 805-813 (2010).
  [arXiv:1002.2644]

• The effect of internal and global modes on the radial distribution function of confined semiflexible polymers

  Florian Thüroff Frederik Wagner Erwin Frey
  EPL 91 (3), 38004 (2010).
  [arXiv:1002.1826]

• Statics and Dynamics of the Wormlike Bundle Model

  Claus Heussinger Felix Schüller Erwin Frey
  Phys. Rev. E 81, 021904 (2010).
  [arXiv:0909.5059]

• Molecular jigsaw: pattern diversity encoded by elementary geometrical features

  C. Rohr M. Balbás Gambra K. Gruber E. C. Constable E. Frey T. Franosch B. A. Hermann
  Nano Lett. 10 (3), 833–837 (2010).

• Development of anomalous diffusion among crowding proteins

  Margaret R. Horton Felix Höfling Joachim O. Rädler Thomas Franosch
  Soft Matter 6, 2648–2656 (2010).

2009

• Escalation of error catastrophe for enzymatic self-replicators

  B. Obermayer E. Frey
  Europhys. Lett. 88, 48006 (2009).
  [arXiv: 0911.1656]

• Conformations of Entangled Semiflexible Polymers: Entropic Trapping and Transient Non-Equilibrium Distributions

  H. Hinsch E. Frey
  ChemPhysChem 10, 2891 – 2899 (2009).
  [arXiv:0908.0110]

• Tension dynamics and viscoelasticity of extensible wormlike chains

  B. Obermayer E. Frey
  Phys. Rev. E 80, 040801(R) (2009).
  [arXiv:0907.1244]

• The edge of neutral evolution in social dilemmas

  Jonas Cremer Tobias Reichenbach Erwin Frey
  New J. Phys. 11, 093029 (2009).
  [arXiv:0905.0563]

• Induction kinetics of a conditional pH stress response system in Escherichia coli

  G. Fritz C. Koller K. Burdack I. Haneburger L. Tetsch K. Jung U. Gerland
  J. Mol. Biol. 393, 272–286 (2009).

• Triggering Enzymatic Activity with ForceTriggering Enzymatic Activity with Force

  H. Gumpp E. M. Puchner J. L. Zimmermann U. Gerland H. Gaub K. Blank
  Nano Lett. 9, 3290-3295 (2009).

• Scaling and universality in coupled driven diffusive models

  A. Basu E. Frey
  J. Stat. Mech. 2009, P08013 (2009) .
  [arXiv:0907.3910]

• Systematic semiclassical expansion for harmonically trapped ideal Bose gases

  B. Klünder A. Pelster
  Eur. Phys. J. B 68, 457-465 (2009).

• Evolutionary selection between alternative modes of gene regulation

  U. Gerland T. Hwa
  PNAS 106, 8841-8846 (2009).

• Direct Observation of the Tube Model in F-Actin Solutions: Tube Dimensions and Curvatures

  M. Romanowska H. Hinsch N. Kirchgeßner M. Giesen B. Hoffmann E. Frey R. Merkel
  Europhys. Lett. 86, 26003 (2009).
  [arXiv:0903.3375]

• Persistent correlation of constrained colloidal motion

  T. Franosch S. Jeney
  Phys. Rev. E 79, 031402 (2009).

• Freely relaxing polymers remember how they were straightened

  B. Obermayer W. Möbius O. Hallatschek E. Frey K. Kroy
  Phys. Rev. E 79, 021804 (2009).
  [arXiv:0812.2794]

• Anomalous scaling in nanopore translocation of structured heteropolymers

  M. McCauley R. Forties U. Gerland R. Bundschuh
  Phys. Biol. 6, 036006 (2009).
  [arXiv:0901.4850]

• Kinetics of genetic switching into the state of bacterial competence

  M. Leisner J.-T. Kuhr J.O. Rädler E. Frey B. Maier
  Biophys. J. 96, 1178-1188 (2009).

• Effective Perrin theory for the anisotropic diffusion of a strongly hindered rod

  T. Munk F. Höfling E. Frey T. Franosch
  Europhys. Lett. 85, 30003 (2009).
  [arXiv:0808.0450]

• Zero-one survival behavior of cyclically competing species

  M. Berr T. Reichenbach M. Schottenloher E. Frey
  Phys. Rev. Lett. 102, 048102 (2009).
  [arXiv:0812.4191]

2008

• Stochastic switching to competence

  M. Leisner K. Stingl E. Frey B. Maier
  Current Opinion in Microbiology 11 (6), 553-559 (2008).

• Spontaneous Unknotting of a Polymer Confined in a Nanochannel

  W. Möbius E. Frey U. Gerland
  Nano Lett. 8 (12), 4518–4522 (2008).
  [arXiv:0807.4091]

• Cluster-resolved dynamic scaling theory and universal corrections for transport on percolating systems

  A. Kammerer F. Höfling T. Franosch
  Europhys. Lett. 84, 66002 (2008).
  [arXiv:0811.1414]

• Enhanced Diffusion of a Needle in a Planar Array of Point Obstacles

  F. Höfling E. Frey T. Franosch
  Phys. Rev. Lett. 101, 120605 (2008).
  [arXiv:0806.1138]

• Instability of Spatial Patterns and Its Ambiguous Impact on Species Diversity

  T. Reichenbach E. Frey
  Phys. Rev. Lett. 101, 058102 (2008).
  [arXiv:0807.0122]

• Domain wall delocalization, dynamics and fluctuations in an exclusion process with two internal states

  T. Reichenbach T. Franosch E. Frey
  Eur. Phys. J. E 27, 47-56 (2008).
  [arXiv:0801.4394]

• Entangled Dynamics of a Stiff Polymer

  F. Höfling T. Munk E. Frey T. Franosch
  Phys. Rev. E 77, 060904(R) (2008).
  [arXiv:0805.4546]

• Anisotropic Memory Effects in Confined Colloidal Diffusion

  S. Jeney B. Lukić J. A. Kraus T. Franosch L. Forró
  Phys. Rev. Lett. 100, 240604 (2008).
  [arXiv:0805.3227]

• Self-Organization of Mobile Populations in Cyclic Competition

  T. Reichenbach M. Mobilia E. Frey
  J. Theor. Biol. 254, 368-383 (2008).
  [arXiv:0801.1798]

• Stochastic effects on biodiversity in cyclic coevolutionary dynamics

  T. Reichenbach M. Mobilia E. Frey
  Biophys. J. 96 (3), 631a-632a (2008).
  [arXiv:q-bio/0610014]

• Timing and Dynamics of Single Cell Gene Expression in the Arabinose Utilization System

  J. A. Megerle G. Fritz U. Gerland K. Jung J. O. Rädler
  Biophys. J. 95 (4), 2103-2115 (2008).

• Critical dynamics of ballistic and Brownian particles in a heterogenous environment

  F. Höfling T. Munk E. Frey T. Franosch
  J. Chem. Phys. 128, 164517 (2008).
  [arXiv:0712.2313]

• Microscale Fluid Flow Induced by Thermoviscous Expansion Along a Traveling Wave

  F. M. Weinert J. A. Kraus T. Franosch D. Braun
  Phys. Rev. Lett. 100, 164501 (2008).
  [arXiv:0804.0384]

• Velocity oscillations in actin-based motility

  A. Gholami M. Falcke E. Frey
  New J. Phys. 10, 033022 (2008).
  [arXiv:0704.1390]

• Anomalous finite-size effects in the Battle of the Sexes

  J. Cremer T. Reichenbach E. Frey
  Eur. Phys. J. B 63, 373-380 (2008).
  [arXiv:0709.0225]

• Microtubule dynamics depart from wormlike chain model

  K. M. Taute F. Pampaloni E. Frey E. Florin
  Phys. Rev. Lett. 100, 028102 (2008).
  [arXiv:0708.1928]

• Cytoskeletal bundle mechanics

  M. Bathe C. Heussinger M. Claessens A. Bausch E. Frey
  Biophys. J. 94, 2955-2964 (2008).
  [arXiv:q-bio/0607040]

2007

• Basal expression rate of comK sets a 'switching-window' into the K-state of Bacillus subtilis

  M. Leisner K. Stingl J.O. Rädler B. Maier
  Mol. Microbiol. 63 (6), 1806 - 1816 (2007).

• Coupling of Transverse and Longitudinal Response in Stiff Polymers

  B. Obermayer O. Hallatschek
  Phys. Rev. Lett. 99, 098302 (2007).
  [arXiv:0704.3223]

• Noise and Correlations in a Spatial Population Model with Cyclic Competition

  T. Reichenbach M. Mobilia E. Frey
  Phys. Rev. Lett. 99, 238105 (2007).
  [arXiv:0710.0383]

• Designing sequential transcription logic: a simple genetic circuit for conditional memory

  G. Fritz N.E. Buchler T. Hwa U. Gerland
  Syst. Synth. Biol. 1 (2), 89-98 (2007).

• Stretching dynamics of semiflexible polymers

  B. Obermayer O. Hallatschek E. Frey K. Kroy
  Euro. Phys. J. E 23, 375-388 (2007).
  [arXiv:cond-mat/0603556]

• Mobility promotes and jeopardizes biodiversity in rock-paper-scissors games

  T. Reichenbach M. Mobilia E. Frey
  Nature 448, 1046-1049 (2007).
  [arXiv:0709.0217] [Movie I (9 MByte)] [Movie II (9 MByte)]

• Mechanics of bundled semiflexible polymer networks

  O. Lieleg M.M.A.E. Claessens C. Heussinger E. Frey A.R. Bausch
  Phys. Rev. Lett. 99, 088102 (2007).
  [arXiv:cond-mat/0611752]

• Fluctuating semiflexible polymer ribbon constrained to a ring

  K. Alim E. Frey
  Eur. Phys. J. E 24, 185-191 (2007).
  [arXiv:0708.0111]

• Conformations of Confined Biopolymers

  F. Wagner G. Lattanzi E. Frey
  Phys. Rev. E 75, 050902(R) (2007).
  [arXiv:cond-mat/0607496]

• Force distribution and force chains in random stiff fiber networks

  C. Heussinger E. Frey
  Eur. Phys. J. E. 24, 47 (2007).
  [arXiv:0705.1425]

• Optimal flexibility for conformational transitions in macromolecules

  R. Neher W. Möbius E. Frey U. Gerland
  Phys. Rev. Lett. 99, 178101 (2007).
  [arXiv:0704.1546]

• Shapes of semiflexible polymer rings

  K. Alim E. Frey
  Phys. Rev. Lett. 99, 198102 (2007).
  [arXiv:q-bio/0703049]

• Tension dynamics in semiflexible polymers. Part II: Scaling solutions and applications

  O. Hallatschek E. Frey K. Kroy
  Phys. Rev. E 75, 031906 (2007).
  [arXiv:cond-mat/0609638]

• Tension dynamics in semiflexible polymers. Part I: Coarse-grained equations of motion

  O. Hallatschek E. Frey K. Kroy
  Phys. Rev. E 75, 031905 (2007).
  [arXiv:cond-mat/0609647]

• Non-affine rubber elasticity for stiff polymer networks

  C. Heussinger B. Schaefer E. Frey
  Phys. Rev. E 76 (3), 031906 (2007).
  [arXiv:cond-mat/0703095]

• Quantitative Tube Model for Semiflexible Polymer Solutions

  H. Hinsch J. Wilhem E. Frey
  Eur. Phys. J. E 24 (1), 35-46 (2007).
  [arXiv:cond-mat/0703096]

• Spin models for orientational ordering of colloidal molecular crystals

  A. Sarlah E. Frey T. Franosch
  Phys. Rev. E 75, 021402 (2007).
  [arXiv:cond-mat/0608353]

• Crossover in the Slow Decay of Dynamic Correlations in the Lorentz Model

  F. Höfling T. Franosch
  Phys. Rev. Lett. 98, 140601 (2007).
  [arXiv:cond-mat/0701659]

• Statistical Mechanics of Semiflexible Bundles of Wormlike Polymer Chains

  C. Heussinger M. Bathe E. Frey
  Phys. Rev. Lett. 99, 048101 (2007).
  [arXiv:cond-mat/0702097]

• Traffic jams induced by rare switching events in two-lane transport

  T. Reichenbach E. Frey T. Franosch
  New J. Phys. 9, 159 (2007).
  [arXiv:cond-mat/0702022]

• The Role of Architecture in the Elastic Response of Semiflexible Polymer and Fiber Networks

  C. Heussinger E. Frey
  Phys. Rev. E 75, 011917 (2007).
  [arXiv:cond-mat/0512557]

2006

• Thermal fluctuations of grafted microtubules provide evidence of a length-dependent persistence length

  F. Pampaloni G. Lattanzi Alexandr Jonáš T. Surrey E. Frey E.-L. Florin
  PNAS 103 (27), 10248-10253 (2006).
  [arXiv:q-bio/0503037]

• Coexistence versus extinction in the stochastic cyclic Lotka-Volterra model

  T. Reichenbach M. Mobilia E. Frey
  Phys. Rev. E 74, 051907 (2006).
  [arXiv:q-bio/0605042]

• Exclusion Processes with Internal States

  T. Reichenbach T. Franosch E. Frey
  Phys. Rev. Lett. 97, 050603 (2006).
  [arXiv:cond-mat/0605208]

• Kinetic Accessibility of Buried DNA Sites in Nucleosomes

  W. Möbius R. A. Neher U. Gerland
  Phys. Rev. Lett. 97, 208102 (2006).
  [arXiv:q-bio/0605017]

• Bottleneck-induced transitions in a minimal model for intracellular transport

  P. Pierobon M. Mobilia R. Kouyos E. Frey
  Phys. Rev. E 74, 031906 (2006).
  [arXiv:cond-mat/0604356]

• Actin-binding proteins sensitively mediate F-actin bundle stiffness

  M. Claessens M. Bathe E. Frey A. Bausch
  Nat. Mater. 5, 748-753 (2006).
  [Preprint]

• Dynamics of semiflexible polymers in a flow field

  T. Munk O. Hallatschek C. Wiggins E. Frey
  Phys. Rev. E 74, 041911 (2006).
  [arXiv:q-bio/0604032]

• Floppy Modes and Non-Affine Deformations in Random Fiber Networks

  C. Heussinger E. Frey
  Phys. Rev. Lett. 97, 105501 (2006).
  [arXiv:cond-mat/0603697]

• Bulk-driven Non-equilibrium Phase Transitions in a Mesoscopic Ring

  H. Hinsch E. Frey
  Phys. Rev. Lett. 97, 095701 (2006).
  [arXiv:cond-mat/0603698]

• Driven lattice gas of dimers coupled to a bulk reservoir

  P. Pierobon T. Franosch E. Frey
  Phys. Rev. E 74, 031920 (2006).
  [arXiv:cond-mat/0603385]

• Entropic forces generated by grafted semiflexible polymers

  A. Gholami J. Wilhelm E. Frey
  Phys. Rev. E 74, 041803 (2006).
  [arXiv:cond-mat/0603101]

• Fluctuations and correlations in lattice models for predator-prey interaction

  M. Mobilia I. T. Georgiev U. C. Täuber
  Phys. Rev. E 73, 040903(R) (2006).
  [arXiv:q-bio/0508043]

• Localization Transition of the 3D Lorentz Model and Continuum Percolation

  F. Höfling T. Franosch E. Frey
  Phys. Rev. Lett. 96, 165901 (2006).
  [arXiv:cond-mat/0510442]

• Intermediate phase in DNA melting

  R. Neher U. Gerland
  Phys. Rev. E 73 (3), 030902(R) (2006).
  [arXiv:q-bio/0509015]

• Stiff Polymers, Foams and Fiber Networks

  C. Heussinger E. Frey
  Phys. Rev. Lett. 96, 017802 (2006).
  [arXiv:cond-mat/0503359]

• Microrheology probes length scale dependent rheology

  J. Liu M.L. Gardel K. Kroy E. Frey B.D. Hoffmann J.C. Crocker A.R. Bausch D.A. Weitz
  Phys. Rev. Lett. 96, 118104 (2006).
  [Preprint]

• A puzzle in DNA biophysics

  R. Bundschuh U. Gerland
  Eur. Phys. J. E 19, 347-349 (2006).

• Dynamics of intramolecular recognition: Base-pairing in DNA/RNA near and far from equilibrium

  R. Bundschuh U. Gerland
  Eur. Phys. J. E 19, 319–329 (2006).

2005

• Renewal processes and fluctuation analysis of molecular stepping

  J.E. Santos T. Franosch A. Parmeggiani E. Frey
  Phys. Biol. 2, 207 (2005).
  [arXiv:cond-mat/0505704]

• Coupled dynamics of RNA folding and nanopore translocation

  R. Bundschuh U. Gerland
  Phys. Rev. Lett. 95 (20), 208104 (2005).
  [arXiv:q-bio/0508004]

• Oscillations in molecular motor assemblies

  A. Vilfan E. Frey
  J. Phys. Condens. Matter 17, 3901-3912 (2005).
  [arXiv:physics/0508033]

• Melting of colloidal molecular crystals on triangular lattices

  A. Sarlah T. Franosch E. Frey
  Phys. Rev. Lett. 95, 088302 (2005).
  [arXiv:cond-mat/0502586]

• Nonlinear protein degradation and the function of genetic circuits

  N.E. Buchler U. Gerland T. Hwa
  PNAS 102 (27), 9559-9564 (2005).

• DNA as a programmable viscoelastic nanoelement

  R.A. Neher U. Gerland
  Biophys. J. 89 (6), 3846-3855 (2005).
  [arXiv:q-bio/0506026]

• Statics and Dynamics of Single DNA Molecules Confined in Nanochannels

  W. Reisner K.J. Morton R. Riehn Y.M. Wang Z. Yu M. Rosen J.C. Sturm S.Y. Chou E. Frey R.H. Austin
  Phys. Rev. Lett. 94, 196101 (2005).

• Transcriptional regulation by the numbers: models

  L. Bintu N.E. Buchler H.G. Garcia U. Gerland T. Hwa J. Kondev R. Phillips
  Current Opinion in Genetics & Development 15, 116 (2005).
  [PDF]

• Transcriptional regulation by the numbers: applications

  L. Bintu N.E. Buchler H.G. Garcia U. Gerland T. Hwa J. Kondev R. Phillips
  Current Opinion in Genetics & Development 15, 125 (2005).
  [PDF]

• Dynamic correlation functions and Boltzmann Langevin approach for driven one dimensional lattice gas

  P. Pierobon A. Parmeggiani F. von Oppen E. Frey
  Phys. Rev. E 72, 036123 (2005).
  [arXiv:cond-mat/0503360]

• Propagation and Relaxation of Tension in Stiff Polymers

  O. Hallatschek E. Frey K. Kroy
  Phys. Rev. Lett. 94, 077804 (2005).
  [arXiv:cond-mat/0405367]

• Bimodality in the transverse fluctuations of a grafted semiflexible polymer and the diffusion-convection analogue: an effective-medium approach

  P. Benetatos T. Munk E. Frey
  Phys. Rev. E 72, 030801(R) (2005).
  [arXiv:cond-mat/0501546]

2004

• Dynamics of force-induced DNA slippage

  R. Neher U. Gerland
  Phys. Rev. Lett. 93, 198102 (2004).

• Translocation of structured polynucleotides through nanopores

  U. Gerland R. Bundschuh T. Hwa
  Phys. Biol. 1, 19 (2004).

2003

• Dynamics of Competitive Evolution on a Smooth Landscape

  W. Peng U. Gerland T. Hwa H. Levine
  Phys. Rev. Lett. 90, 088103 (2003).

• Mechanically probing the folding pathway of single RNA molecules

  U. Gerland R. Bundschuh T. Hwa
  Biophys. J. 84, 2831 (2003).

• On schemes of combinatorial transcription logic

  N. E. Buchler U. Gerland T. Hwa
  PNAS 100 (9), 5136-5141 (2003).

2002

• On the Selection and Evolution of Regulatory Binding Motifs

  U. Gerland T. Hwa
  J. Mol. Evol. 55, 386 (2002).

• Physical Constraints and Functional Characteristics of Transcription Factor-DNA Interaction

  U. Gerland D. Moroz T. Hwa
  PNAS 99 (19), 12015-12020 (2002).

2001

• Force-induced denaturation of RNA

  U. Gerland R. Bundschuh T. Hwa
  Biophys. J. 81, 1324 (2001).