Research Papers

2013

• Alexander Buchner, Filipe Tostevin, Ulrich Gerland,
  Clustering and optimal arrangement of enzymes in reaction-diffusion systems,
  Phys. Rev. Lett. 110, 208104 (2013).

• Steffen Rulands, Alejandro Zielinski, Erwin Frey,
  Global attractors and extinction dynamics of cyclically competing species,
  Phys. Rev. E 87, 052710 (2013). [arxiv:1305.0119]

• Christoph A. Weber, Timo Hanke, Julien Deseigne, Sébastien Léonard, Olivier Dauchot, Erwin Frey, Hugue Chaté,
  Long-range ordering of vibrated polar disks,
  Phys. Rev. Lett. 110, 208001 (2013). [arxiv:1304.4760]

• Timo Hanke, Christoph A. Weber, Erwin Frey,
  Understanding Collective Dynamics of Soft Active Colloids by Binary Scattering,
  submitted for publication.

• Tina Freisinger, Ben Klünder, Jared Johnson, Nikola Müller, Garwin Pichler, Gisela Beck, Michael Costanzo, Charles Boone, Richard A. Cerione, Erwin Frey, Roland Wedlich-Söldner,
  Establishment of a robust single axis of cell polarity by coupling of multiple positive feedback loops,
  Nature Communications 4:1807 (2013).

• Christoph A. Weber, Florian Thüroff, Erwin Frey,
  Role of particle conservation in self-propelled particle systems,
  New J. Phys. 15 045014 (2013). [arxiv:1301.7701]

• Johannes Knebel, Torben Krüger, Markus F. Weber, Erwin Frey,
  Coexistence and survival in conservative Lotka-Volterra networks,
  Phys. Rev. Lett. 110, 168106 (2013). [arxiv:1303.7116]

• Patrick Hillenbrand, Georg Fritz, Ulrich Gerland,
  Biological Signal Processing with a Genetic Toggle Switch,
  submitted for publication.

• Anatolij Gelimson, Jonas Cremer, Erwin Frey,
  Mobility, fitness collection, and the breakdown of cooperation,
  Phys. Rev. E 87, 042711 (2013). [arXiv:1301.7682]

• Florian Thüroff, Christoph A. Weber, Erwin Frey,
  A Critical Assessment of the Boltzmann Approach for Active Systems,
  submitted for publication.

• Christof B. Mast, Severin Schink, Ulrich Gerland, Dieter Braun,
  Escalation of Polymerization in a Thermal Gradient,
  accepted for publication in PNAS.

• Wolfram Möbius, Brendan Osberg, Alexander M. Tsankov, Oliver J. Rando, Ulrich Gerland,
  Towards a unified physical model of nucleosome patterns flanking transcription start sites,
  PNAS 110 5719-5724 (2013).

• Matthias Rank, Louis Reese, Erwin Frey,
  Cooperative effects enhance the transport properties of molecular spider teams,
  Phys. Rev. E 87, 032706 (2013). [arxiv:1302.1853]

• Tiago Ramalho, Marco Selig, Ulrich Gerland, Torsten A. Enßlin,
  Simulation of stochastic network dynamics via entropic matching,
  Phys. Rev. E 87, 022719 (2013). [arxiv:1209.3700]

• Anton A. Winkler, Erwin Frey,
  Long-Range and Many-Body Effects in Coagulation Processes,
  Phys. Rev. E 87, 022136 (2013) . [arxiv:1302.0481]

• Cristina-Maria Pop, Erwin Frey,
  Language change in a multiple group society,
  submitted for publication.

• Steffen Rulands, Ben Klünder, Erwin Frey,
  Stability of localized wave fronts in bistable systems,
  Phys. Rev. Lett. 110, 038102 (2013). [arxiv:1212.1036]

• Kevin Leu, Eric Kervio, Benedikt Obermayer, Rebecca Turk-MacLeod, Caterina Yuan, Jesus-Mario Luevano, Eric Chen, Ulrich Gerland, Clemens Richert, Irene A. Chen,
  Cascade of Reduced Speed and Accuracy After Errors in Enzyme-Free Copying of Nucleic Acid Sequences,
  J. Am. Chem. Soc., 135 (1), 354–366 (2013).

• Sara Kesel, Andreas Mader, Carolin Höfler, Thorsten Mascher, Madeleine Leisner,
  Immediate and heterogeneous response of the LiaFSR two-component system of Bacillus subtilis to the peptide antibiotic bacitracin,
  accepted for publication.

• Ben Klünder, Tina Freisinger, Roland Wedlich-Söldner, Erwin Frey,
  Cell Polarization in Yeast Optimizes Spatial and Temporal Control of Cdc42 Signaling,
  submitted for publication.

• Ingo Homrighausen, Anton A. Winkler, Erwin Frey,
  Fluctuation Effects in the Pair Annihilation Process with Levy Dynamics,
  submitted for publication.

2012

• Christoph Weber, Volker Schaller, Andreas R. Bausch, Erwin Frey,
  Nucleation-induced transition to collective motion in active systems,
  Phys. Rev. E 86, 030901(R) (2012). [arxiv:1208.5448]

• Ina Haneburger, Georg Fritz, Nicole Jurkschat, Larissa Tetsch, Andreas Eichinger, Arne Skerra, Ulrich Gerland, Kirsten Jung,
  Deactivation of the E. coli pH stress sensor CadC by cadaverine,
  Journal of Molecular Biology, available online 17 Sept. 2012.

• Anna Melbinger, Louis Reese, Erwin Frey,
  Microtubule Length Regulation by Molecular Motors,
  Phys. Rev. Lett. 108, 258104 (2012). [arXiv:1204.5655]

• Jacob Halatek, Erwin Frey,
  Highly Canalized MinD Transfer and MinE Sequestration Explain the Origin of Robust MinCDE-Protein Dynamics,
  Cell Reports 1, 6, 741-752 (2012), doi:10.1016/j.celrep.2012.04.005.

• A. Dobrinevski, E. Frey,
  Extinction in neutrally stable stochastic Lotka-Volterra models,
  Phys. Rev. E 85, 051903 (2012). [arXiv:1001.5235]

• Jonas Cremer, Anna Melbinger, Erwin Frey,
  Growth dynamics and the evolution of cooperation in microbial populations,
  Scientific Reports 2, 281 (2012). [arXiv:1203.5863]

• Anton Winkler, Erwin Frey,
  Validity of the law of mass action in three-dimensional coagulation processes,
  Phys. Rev. Lett. 108, 108301 (2012). [arXiv:1202.0182]

• M. Balbás Gambra, C. Rohr, K. Gruber, B. A. Hermann, T. Franosch,
  Simulating self-organized molecular patterns using interaction-site models,
  Eur. Phys. J. E 35 25 (2012).

• Andreas Mader, Kathrin Grubert, Ricardo Castelli, Bianca A. Hermann, Peter H. Seeberger, Joachim O. Rädler, Madeleine Leisner,
  Discrimination of Escherichia coli strains using Glycan Cantilever Array Sensors,
  Nano Lett. 12, 420–423 (2012).

• Severin Schink, Sephan Renner, Karen Alim, Vera Arnaut, Friedrich C. Simmel, Ulrich Gerland,
  Quantitative analysis of the nanopore translocation dynamics of simple structured polynucleotides,
  Biophys. J. 102, 85–95 (2012).

• Madeleine Leisner, L. Bleris, J. Lohmueller, Z. Xie, K. Benenson,
  MicroRNA Circuits for Transcriptional Logic,
  Methods Mol Biol. 813, 169-86 (2012).

2011

• Volker Schaller, Christoph Weber, Benjamin Hammerich, Erwin Frey, Andreas R. Bausch,
  Frozen steady states in active systems,
  PNAS 108, 19183-19188 (2011). [arXiv:1109.2764]

• Jonas Cremer, Anna Melbinger, Erwin Frey,
  Evolutionary and Population Dynamics: A Coupled Approach,
  Phys. Rev. E 84, 051921 (2011). [arXiv:1108.2604]

• Thomas Schötz, Richard A. Neher, Ulrich Gerland,
  Target search on a dynamic DNA molecule,
  Phys. Rev. E 84, 051911 (2011). [arXiv:1109.3211]

• Wirth R, Bellack A, Bertl M, Bilek Y, Heimerl T, Herzog B, Leisner M, Probst A, Rachel R, Sarbu C, Schopf S, Wanner G,
  The mode of cell wall growth in selected archaea is similar to the general mode of cell wall growth in bacteria as revealed by fluorescent dye analysis,
  Environmental Microbiology 77, 1556-1562 (2011).

• Jan-Timm Kuhr, Madeleine Leisner, Erwin Frey,
  Range Expansion with Mutation and Selection: Dynamical Phase Transition in a Two-Species Eden Model,
  New J. Phys. 13, 113013 (2011). [arXiv:1110.2639]

• Marta Balbás Gambra, Erwin Frey,
  Social dynamics with peer support on heterogeneous networks: the "mafia model",
  Eur. Phys. J. B. 83, 507-518 (2011). [arXiv:1108.4585]

• B. Meier, A. Zielinski, C. Weber, D. Arcizet, S. Youssef, T. Franosch, J. O. Rädler, D. Heinrich,
  Chemical cell trapping in controlled alternating gradient fields,
  Proc. Natl. Acad. Sci. 108, 11417-11422 (2011).

• Louis Reese, Anna Melbinger, Erwin Frey,
  Crowding of molecular motors determines microtubule depolymerization,
  Biophysical Journal 101, 2190-2200 (2011). [arXiv:1109.1155]

• Kevin Leu, Benedikt Obermayer, Sudha Rajamani, Ulrich Gerland, Irene A. Chen,
  The prebiotic evolutionary advantage of transferring genetic information from RNA to DNA,
  Nucl. Acids Res. 39, 8135-8147 (2011).

• Nico Geisel, Ulrich Gerland,
  Physical limits on cooperative protein-DNA binding and the kinetics of combinatorial transcription regulation,
  Biophys. J. 101, 1569-79 (2011). [arXiv:1109.3351]

• Johannes H.P. Schulz, Anatoly Kolomeisky, Erwin Frey,
  Current reversal and exclusion processes with history-dependent random walks,
  EPL, 95, 30004 (2011). [arXiv:1104.5378]

• Benedikt Obermayer, Hubert Krammer, Dieter Braun, Ulrich Gerland,
  Emergence of information transmission in a prebiotic RNA reactor,
  Phys. Rev. Lett 107, 018101 (2011). [arXiv:1105.3758]

• Anna Melbinger, Tobias Reichenbach, Thomas Franosch, Erwin Frey,
  Driven Transport on Parallel Lanes with Particle Exclusion and Obstruction,
  Phys. Rev. E 83, 031923 (2011). [arXiv:1002.3766]

• Volker Schaller, Christoph Weber, Erwin Frey, Andreas Bausch,
  Polar Pattern Formation: Hydrodynamic coupling of driven filaments,
  Soft Matter 7 (7), 3213 - 3218 (2011).

• Peter H. Colberg, Felix Höfling,
  Highly accelerated simulations of glassy dynamics using GPUs: Caveats on limited floating-point precision,
  Comp. Phys. Comm. 182, 1120-1129 (2011). [arXiv:0912.3824] [HALMD package]

• Felix Höfling, Karl-Ulrich Bamberg, Thomas Franosch,
  Anomalous transport resolved in space and time by fluorescence correlation spectroscopy,
  Soft Matter 7, 1358-1363 (2011). [arXiv:1003.3762]

• Florian Thüroff, Benedikt Obermayer, Erwin Frey,
  Longitudinal Response of Confined Semiflexible Polymers,
  Phys. Rev. E 83, 021802 (2011). [arXiv:1009.2251]

• H. Hinsch, L. Reese, E. Frey,
  Reply to Comment on "Bulk-Driven Nonequilibrium Phase Transitions in a Mesoscopic Ring",
  Phys. Rev. Lett. 106, 079602 (2011).

• Steffen Rulands, Tobias Reichenbach, Erwin Frey,
  Three-fold way to extinction in populations of cyclically competing species,
  J. Stat. Mech. L01003 (2011). [arXiv:1005.5704]

• Thomas Franosch, Markus Spanner, Teresa Bauer, Gerd E. Schröder-Turk, Felix Höfling,
  Space-resolved dynamics of a tracer in a disordered solid,
  J. Non-Cryst. Solids 357, 472 (2011). [arXiv:1004.3670]

• Torsten Enßlin, Cornelius Weig,
  Inference with minimal Gibbs free energy in information field theory,
  submitted. [arXiv:1004.2868]

• H. Hinsch, E. Frey,
  Non-Affine Shear Modulus in Entangled Networks of Semiflexible Polymers,
  Submitted for publication. [arXiv:0907.1875]

2010

• Jürgen Horbach, Thomas Voigtmann, Felix Höfling, Thomas Franosch,
  Localization phenomena in models of ion-conducting glass formers,
  Eur. Phys. J. Spec. Top. 189, 141 (2010).

• Karen Alim, Erwin Frey,
  Quantitative predictions on auxin-induced polar distribution of PIN proteins during vein formation in leaves,
  Eur. Phys. J. E 22, 165–173 (2010). [arXiv:1005.3768]

• Roy Beck, Joanna Deek, Myung Chul Choi, Taiji Ikawa, Osamu Watanabe, Erwin Frey, Philip Pincus, Cyrus R. Safinya,
  Unconventional Salt Trend from Soft to Stiff in Single Neurofilament Biopolymers,
  Langmuir 26, 18595–18599 (2010).

• Teresa Bauer, Felix Höfling, Tobias Munk, Erwin Frey, Thomas Franosch,
  The Localization Transition of the Two-Dimensional Lorentz Model,
  The European Physical Journal – Special Topics 189, 103–118 (2010). [arXiv:1003.2918]

• B. A. Hermann, C. Rohr, M. Balbás Gambra, A. Malecki, M. S. Malarek, E. Frey, T. Franosch,
  Molecular self-organization: predicting the pattern diversity and lowest energy state of competing ordering motifs,
  Phys. Rev. B 82, 165451 (2010).

• Stephan Renner, Andrey Bessonov, Ulrich Gerland, Friedrich C. Simmel,
  Sequence-dependent unfolding kinetics of DNA hairpins studied by nanopore force spectroscopy,
  J. Phys.: Condens. Matter 22, 454119 (2010).

• Anna Melbinger, Jonas Cremer, Erwin Frey,
  Evolutionary game theory in growing populations,
  Physical Review Letters 105, 178101 (2010). [arXiv:1010.3845]

• Benedikt Obermayer, Erwin Frey,
  Error thresholds for self- and cross-specific enzymatic replication,
  Journal of Theoretical Biology 267, 653–662 (2010). [arXiv:1003.1304]

• Thomas Franosch, Felix Höfling, Teresa Bauer, Erwin Frey,
  Persistent memory for a Brownian walker in a random array of obstacles,
  Chemical Physics 375, 540–547 (2010). [arXiv:1004.2807]

• Kirstin Fritz, Georg Fritz, Barbara Windschiegl, Claudia Steinem, Bert Nickel,
  Arrangement of Annexin A2 tetramer and its impact on the structure and diffusivity of supported lipid bilayers,
  Soft Matter 6, 4084–4094 (2010). [selected for Virtual Journal of Biological Physics Research]

• M. Leisner, L. Bleris, J. Lohmueller, Z. Xie, K. Benenson,
  Rationally designed logic integration of regulatory signals in mammalian cells,
  Nature Nanotechnology 5, 666–670 (2010).

• Volker Schaller, Christoph Weber, Christine Semmrich, Erwin Frey, Andreas R. Bausch,
  Polar patterns of driven filaments,
  Nature 467, 73–77 (2010).

• W. Möbius, U. Gerland,
  Quantitative test of the barrier nucleosome model for statistical positioning of nucleosomes up- and downstream of transcription start sites,
  PLoS Comput Biol 6(8): e1000891 (2010). [arXiv:1009.0169]

• Cornelius Weig, Torsten Enßlin,
  Bayesian analysis of spatially distorted cosmic signals from Poissonian data,
  accepted by MNRAS. [arXiv:1003.1311]

• Katja Ostermeir, Karen Alim, Erwin Frey,
  Confinement induces conformational transition of semiflexible polymer rings to figure eight form,
  Soft Matter 6, 3467–3471 (2010). [arXiv:1004.4574]

• Anton Winkler, Tobias Reichenbach, Erwin Frey,
  Coexistence in a One-Dimensional Cyclic Dominance Process,
  Phys. Rev. E 81, 060901(R) (2010). [selected for Virtual Journal of Biological Physics Research] [arXiv:1006.0383]

• Benjamin Andrae, Jonas Cremer, Tobias Reichenbach, Erwin Frey,
  Entropy production of cyclic population dynamics,
  Phys. Rev. Lett. 104, 218102 (2010). [arXiv:1005.0865]

• Katja Ostermeir, Karen Alim, Erwin Frey,
  Buckling of stiff polymer rings in weak spherical confinement,
  Phys. Rev. E 81, 061802 (2010). [selected for Virtual Journal of Biological Physics Research] [arXiv:1003.4267]

• F. Drube, K. Alim, G. Witz, G. Dietler, E. Frey,
  Excluded Volume Effects on Semiflexible Ring Polymers,
  Nano Letters 10 (4), 1445-1449 (2010). [arXiv:0906.3991] [LMU press release]

• Gerlinde Schwake, Simon Youssef, Jan-Timm Kuhr, Sebastian Gude, Maria Pamela David, Eduardo Mendoza, Erwin Frey, Joachim O. Rädler,
  Predictive Modeling of non-viral Gene Transfer,
  Biotechnol. Bioeng. 105: 805-813 (2010). [arXiv:1002.2644]

• Florian Thüroff, Frederik Wagner, Erwin Frey,
  The effect of internal and global modes on the radial distribution function of confined semiflexible polymers,
  EPL 91 (3) 38004 (2010). [arXiv:1002.1826]

• Claus Heussinger, Felix Schüller, Erwin Frey,
  Statics and Dynamics of the Wormlike Bundle Model,
  Phys. Rev. E 81, 021904 (2010). [arXiv:0909.5059]

• C. Rohr, M. Balbás Gambra, K. Gruber, E. C. Constable, E. Frey, T. Franosch, B. A. Hermann,
  Molecular jigsaw: pattern diversity encoded by elementary geometrical features,
  Nano Letters 10 (3), 833–837 (2010). [Pressemitteilung]

• Margaret R. Horton, Felix Höfling, Joachim O. Rädler, Thomas Franosch,
  Development of anomalous diffusion among crowding proteins,
  Soft Matter 6, 2648–2656 (2010).

2009

• B. Obermayer, E. Frey,
  Escalation of error catastrophe for enzymatic self-replicators,
  Europhys. Lett. 88, 48006 (2009). [arXiv: 0911.1656]

• H. Hinsch, E. Frey,
  Conformations of Entangled Semiflexible Polymers: Entropic Trapping and Transient Non-Equilibrium Distributions,
  ChemPhysChem 10, 2891 – 2899 (2009). [arXiv:0908.0110]

• B. Obermayer, E. Frey,
  Tension dynamics and viscoelasticity of extensible wormlike chains,
  Phys. Rev. E 80, 040801(R) (2009). [arXiv:0907.1244]

• Jonas Cremer, Tobias Reichenbach, Erwin Frey,
  The edge of neutral evolution in social dilemmas,
  New J. Phys. 11 093029 (2009). [arXiv:0905.0563]

• G. Fritz, C. Koller, K. Burdack, I. Haneburger, L. Tetsch, K. Jung, U. Gerland,
  Induction kinetics of a conditional pH stress response system in Escherichia coli,
  J. Mol. Biol. 393, 272–286 (2009).

• H. Gumpp, E. M. Puchner, J. L. Zimmermann, U. Gerland, H. Gaub, K. Blank,
  Triggering Enzymatic Activity with ForceTriggering Enzymatic Activity with Force,
  Nano Lett. 9, 3290-3295 (2009).

• A. Basu, E. Frey,
  Scaling and universality in coupled driven diffusive models,
  J. Stat. Mech. P08013 (2009) . [arXiv:0907.3910]

• B. Klünder, A. Pelster,
  Systematic semiclassical expansion for harmonically trapped ideal Bose gases,
  Eur. Phys. J. B 68, 457-465 (2009).

• U. Gerland, T. Hwa,
  Evolutionary selection between alternative modes of gene regulation,
  PNAS 106, 8841-8846 (2009).

• M. Romanowska, H. Hinsch, N. Kirchgeßner, M. Giesen, B. Hoffmann, E. Frey, R. Merkel,
  Direct Observation of the Tube Model in F-Actin Solutions: Tube Dimensions and Curvatures,
  Europhys. Lett. 86, 26003 (2009). [arXiv:0903.3375]

• T. Franosch, S. Jeney,
  Persistent correlation of constrained colloidal motion,
  Phys. Rev. E 79, 031402 (2009).

• B. Obermayer, W. Möbius, O. Hallatschek, E. Frey, K. Kroy,
  Freely relaxing polymers remember how they were straightened,
  Phys. Rev. E 79, 021804 (2009). [arXiv:0812.2794]

• M. McCauley, R. Forties, U. Gerland, R. Bundschuh,
  Anomalous scaling in nanopore translocation of structured heteropolymers,
  Phys. Biol. 6, 036006 (2009). [arXiv:0901.4850]

• M. Leisner, J.-T. Kuhr, J.O. Rädler, E. Frey, B. Maier,
  Kinetics of genetic switching into the state of bacterial competence,
  Biophys. J. 96, 1178-1188 (2009).

• T. Munk, F. Höfling, E. Frey, T. Franosch,
  Effective Perrin theory for the anisotropic diffusion of a strongly hindered rod,
  Europhys. Lett. 85, 30003 (2009). [arXiv:0808.0450]

• M. Berr, T. Reichenbach, M. Schottenloher, E. Frey,
  Zero-one survival behavior of cyclically competing species,
  Phys. Rev. Lett. 102, 048102 (2009). [arXiv:0812.4191]

2008

• M. Leisner, K. Stingl, E. Frey, B. Maier,
  Stochastic switching to competence,
  Current Opinion in Microbiology 11, 6 (2008).

• W. Möbius, E. Frey, U. Gerland,
  Spontaneous Unknotting of a Polymer Confined in a Nanochannel,
  Nano Letters 8 (12), 4518–4522 (2008). [arXiv:0807.4091]

• A. Kammerer, F. Höfling, T. Franosch,
  Cluster-resolved dynamic scaling theory and universal corrections for transport on percolating systems,
  Europhys. Lett. 84, 66002 (2008). [arXiv:0811.1414]

• F. Höfling, E. Frey, T. Franosch,
  Enhanced Diffusion of a Needle in a Planar Array of Point Obstacles,
  Phys. Rev. Lett. 101, 120605 (2008). [arXiv:0806.1138]

• T. Reichenbach, E. Frey,
  Instability of Spatial Patterns and Its Ambiguous Impact on Species Diversity,
  Phys. Rev. Lett. 101, 058102 (2008). [arXiv:0807.0122]

• T. Reichenbach, T. Franosch, E. Frey,
  Domain wall delocalization, dynamics and fluctuations in an exclusion process with two internal states,
  Eur. Phys. J. E 27, 47-56 (2008). [arXiv:0801.4394]

• F. Höfling, T. Munk, E. Frey, T. Franosch,
  Entangled Dynamics of a Stiff Polymer,
  Phys. Rev. E 77, 060904(R) (2008). [arXiv:0805.4546]

• S. Jeney, B. Lukić, J. A. Kraus, T. Franosch, L. Forró,
  Anisotropic Memory Effects in Confined Colloidal Diffusion,
  Phys. Rev. Lett. 100, 240604 (2008). [arXiv:0805.3227]

• T. Reichenbach, M. Mobilia, E. Frey,
  Self-Organization of Mobile Populations in Cyclic Competition,
  J. Theor. Biol. 254, 368-383 (2008). [arXiv:0801.1798]

• T. Reichenbach, M. Mobilia, E. Frey,
  Stochastic effects on biodiversity in cyclic coevolutionary dynamics,
  Banach Center Publications Vol. 80, 259-264 (2008). [arXiv:q-bio/0610014]

• J. A. Megerle, G. Fritz, U. Gerland, K. Jung, J. O. Rädler,
  Timing and Dynamics of Single Cell Gene Expression in the Arabinose Utilization System,
  Biophys. J. 95:2103-2115 (2008).

• F. Höfling, T. Munk, E. Frey, T. Franosch,
  Critical dynamics of ballistic and Brownian particles in a heterogenous environment,
  J. Chem. Phys. 128, 164517 (2008). [arXiv:0712.2313]

• F. M. Weinert, J. A. Kraus, T. Franosch, D. Braun,
  Microscale Fluid Flow Induced by Thermoviscous Expansion Along a Traveling Wave,
  Phys. Rev. Lett. 100, 164501 (2008). [arXiv:0804.0384]

• A. Gholami, M. Falcke, E. Frey,
  Velocity oscillations in actin-based motility,
  New J. Phys. 10, 033022 (2008). [arXiv:0704.1390]

• J. Cremer, T. Reichenbach, E. Frey,
  Anomalous finite-size effects in the Battle of the Sexes,
  Eur. Phys. J. B 63, 373-380 (2008). [arXiv:0709.0225]

• K. M. Taute, F. Pampaloni, E. Frey, E. Florin,
  Microtubule dynamics depart from wormlike chain model,
  Phys. Rev. Lett. 100, 028102 (2008). [arXiv:0708.1928]

• M. Bathe, C. Heussinger, M. Claessens, A. Bausch, E. Frey,
  Cytoskeletal bundle mechanics,
  Biophys. J. 94, 2955-2964 (2008). [arXiv:q-bio/0607040]

2007

• M. Leisner, K. Stingl, J.O. Rädler, B. Maier,
  Basal expression rate of comK sets a 'switching-window' into the K-state of Bacillus subtilis,
  Molecular Microbiology 63, 6, 1806 - 1816 (2007).

• B. Obermayer, O. Hallatschek,
  Coupling of Transverse and Longitudinal Response in Stiff Polymers,
  Phys. Rev. Lett. 99, 098302 (2007). [arXiv:0704.3223]

• T. Reichenbach, M. Mobilia, E. Frey,
  Noise and Correlations in a Spatial Population Model with Cyclic Competition,
  Phys. Rev. Lett. 99, 238105 (2007). [arXiv:0710.0383]

• G. Fritz, N.E. Buchler, T. Hwa, U. Gerland,
  Designing sequential transcription logic: a simple genetic circuit for conditional memory,
  Systems and Synthetic Biology 1, 89-98 (2007).

• B. Obermayer, O. Hallatschek, E. Frey, K. Kroy,
  Stretching dynamics of semiflexible polymers,
  Euro. Phys. J. E 23, 375-388 (2007). [arXiv:cond-mat/0603556]

• T. Reichenbach, M. Mobilia, E. Frey,
  Mobility promotes and jeopardizes biodiversity in rock-paper-scissors games,
  Nature 448, 1046-1049 (2007). [arXiv:0709.0217] [Movie I (9 MByte)] [Movie II (9 MByte)]

• O. Lieleg, M.M.A.E. Claessens, C. Heussinger, E. Frey, A.R. Bausch,
  Mechanics of bundled semiflexible polymer networks,
  Phys. Rev. Lett. 99, 088102 (2007). [arXiv:cond-mat/0611752]

• K. Alim, E. Frey,
  Fluctuating semiflexible polymer ribbon constrained to a ring,
  Eur. Phys. J. E 24, 185-191 (2007). [arXiv:0708.0111]

• F. Wagner, G. Lattanzi, E. Frey,
  Conformations of Confined Biopolymers,
  Phys. Rev. E 75, 050902(R) (2007). [arXiv:cond-mat/0607496]

• C. Heussinger, E. Frey,
  Force distribution and force chains in random stiff fiber networks,
  Eur. Phys. J. E. 24, 47 (2007). [arXiv:0705.1425]

• R. Neher, W. Möbius, E. Frey, U. Gerland,
  Optimal flexibility for conformational transitions in macromolecules,
  Phys. Rev. Lett. 99, 178101 (2007). [arXiv:0704.1546]

• K. Alim, E. Frey,
  Shapes of semiflexible polymer rings,
  Phys. Rev. Lett. 99, 198102 (2007). [arXiv:q-bio/0703049]

• O. Hallatschek, E. Frey, K. Kroy,
  Tension dynamics in semiflexible polymers. Part II: Scaling solutions and applications,
  Phys. Rev. E 75, 031906 (2007). [arXiv:cond-mat/0609638]

• O. Hallatschek, E. Frey, K. Kroy,
  Tension dynamics in semiflexible polymers. Part I: Coarse-grained equations of motion,
  Phys. Rev. E 75, 031905 (2007). [arXiv:cond-mat/0609647]

• C. Heussinger, B. Schaefer, E. Frey,
  Non-affine rubber elasticity for stiff polymer networks,
  Phys. Rev. E 76 031906 (2007). [arXiv:cond-mat/0703095]

• H. Hinsch, J. Wilhem, E. Frey,
  Quantitative Tube Model for Semiflexible Polymer Solutions,
  Eur. Phys. J. E 24, 35 (2007). [arXiv:cond-mat/0703096]

• A. Sarlah, E. Frey, T. Franosch,
  Spin models for orientational ordering of colloidal molecular crystals,
  Phys. Rev. E 75, 021402 (2007). [arXiv:cond-mat/0608353]

• F. Höfling, T. Franosch,
  Crossover in the Slow Decay of Dynamic Correlations in the Lorentz Model,
  Phys. Rev. Lett. 98, 140601 (2007). [arXiv:cond-mat/0701659]

• C. Heussinger, M. Bathe, E. Frey,
  Statistical Mechanics of Semiflexible Bundles of Wormlike Polymer Chains,
  Phys. Rev. Lett. 99, 048101 (2007). [arXiv:cond-mat/0702097]

• T. Reichenbach, E. Frey, T. Franosch,
  Traffic jams induced by rare switching events in two-lane transport,
  New J. Phys. 9, 159 (2007). [arXiv:cond-mat/0702022]

• C. Heussinger, E. Frey,
  The Role of Architecture in the Elastic Response of Semiflexible Polymer and Fiber Networks,
  Phys. Rev. E 75, 011917 (2007). [arXiv:cond-mat/0512557]

2006

• F. Pampaloni, G. Lattanzi, Alexandr Jonáš, T. Surrey, E. Frey, E.-L. Florin,
  Thermal fluctuations of grafted microtubules provide evidence of a length-dependent persistence length,
  PNAS 103, 10248 (2006). [arXiv:q-bio/0503037]

• T. Reichenbach, M. Mobilia, E. Frey,
  Coexistence versus extinction in the stochastic cyclic Lotka-Volterra model,
  Phys. Rev. E 74, 051907 (2006). [arXiv:q-bio/0605042]

• W. Möbius, R. A. Neher, U. Gerland,
  Kinetic Accessibility of Buried DNA Sites in Nucleosomes,
  Phys. Rev. Lett. 97, 208102 (2006). [arXiv:q-bio/0605017]

• T. Reichenbach, T. Franosch, E. Frey,
  Exclusion Processes with Internal States,
  Phys. Rev. Lett. 97, 050603 (2006). [arXiv:cond-mat/0605208]

• P. Pierobon, M. Mobilia, R. Kouyos, E. Frey,
  Bottleneck-induced transitions in a minimal model for intracellular transport,
  Phys. Rev. E 74, 031906 (2006). [arXiv:cond-mat/0604356]

• M. Claessens, M. Bathe, E. Frey, A. Bausch,
  Actin-binding proteins sensitively mediate F-actin bundle stiffness,
  Nature Materials 5, 748-753 (2006). [Preprint]

• T. Munk, O. Hallatschek, C. Wiggins, E. Frey,
  Dynamics of semiflexible polymers in a flow field,
  Phys. Rev. E 74, 041911 (2006). [arXiv:q-bio/0604032]

• C. Heussinger, E. Frey,
  Floppy Modes and Non-Affine Deformations in Random Fiber Networks,
  Phys. Rev. Lett. 97, 105501 (2006). [arXiv:cond-mat/0603697]

• H. Hinsch, E. Frey,
  Bulk-driven Non-equilibrium Phase Transitions in a Mesoscopic Ring,
  Phys. Rev. Lett. 97, 095701 (2006). [arXiv:cond-mat/0603698]

• P. Pierobon, T. Franosch, E. Frey,
  Driven lattice gas of dimers coupled to a bulk reservoir,
  Phys. Rev. E 74, 031920 (2006). [arXiv:cond-mat/0603385]

• A. Gholami, J. Wilhelm, E. Frey,
  Entropic forces generated by grafted semiflexible polymers,
  Phys. Rev. E 74, 041803 (2006). [arXiv:cond-mat/0603101]

• M. Mobilia, I. T. Georgiev, U. C. Täuber,
  Fluctuations and correlations in lattice models for predator-prey interaction,
  Phys. Rev. E 73, 040903(R) (2006). [arXiv:q-bio/0508043]

• F. Höfling, T. Franosch, E. Frey,
  Localization Transition of the 3D Lorentz Model and Continuum Percolation,
  Phys. Rev. Lett. 96, 165901 (2006). [arXiv:cond-mat/0510442]

• R. Neher, U. Gerland,
  Intermediate phase in DNA melting,
  Rev. E 73, 030902(R) (2006). [arXiv:q-bio/0509015]

• C. Heussinger, E. Frey,
  Stiff Polymers, Foams and Fiber Networks,
  Phys. Rev. Lett. 96, 017802 (2006). [arXiv:cond-mat/0503359]

• J. Liu, M.L. Gardel, K. Kroy, E. Frey, B.D. Hoffmann, J.C. Crocker, A.R. Bausch, D.A. Weitz,
  Microrheology probes length scale dependent rheology,
  Phys. Rev. Lett. 96, 118104 (2006). [Preprint]

• R. Bundschuh, U. Gerland,
  Dynamics of intramolecular recognition: Base-pairing in DNA/RNA near and far from equilibrium,
  Eur. Phys. J. E 19, 319–329 (2006).

• R. Bundschuh, U. Gerland,
  A puzzle in DNA biophysics,
  Eur. Phys. J. E 19, 347-349 (2006).

2005

• J.E. Santos, T. Franosch, A. Parmeggiani, E. Frey,
  Renewal processes and fluctuation analysis of molecular stepping,
  Physical Biology 2, 207 (2005). [arXiv:cond-mat/0505704]

• R. Bundschuh, U. Gerland,
  Coupled dynamics of RNA folding and nanopore translocation.
  [arXiv:q-bio/0508004]

• A. Vilfan, E. Frey,
  Oscillations in molecular motor assemblies,
  J. Phys.: Condens. Matter 17, 3901-3912 (2005). [arXiv:physics/0508033]

• A. Sarlah, T. Franosch, E. Frey,
  Melting of colloidal molecular crystals on triangular lattices,
  Phys. Rev. Lett. 95, 088302 (2005). [arXiv:cond-mat/0502586]

• N.E. Buchler, U. Gerland, T. Hwa,
  Nonlinear protein degradation and the function of genetic circuits,
  PNAS 102, 9559 (2005).

• R.A. Neher, U. Gerland,
  DNA as a programmable viscoelastic nanoelement,
  Biophysical Journal 89:3846-3855 (2005). [arXiv:q-bio/0506026]

• W. Reisner, K.J. Morton, R. Riehn, Y.M. Wang, Z. Yu, M. Rosen, J.C. Sturm, S.Y. Chou, E. Frey, R.H. Austin,
  Statics and Dynamics of Single DNA Molecules Confined in Nanochannels,
  Phys. Rev. Lett. 94, 196101 (2005).

• L. Bintu, N.E. Buchler, H.G. Garcia, U. Gerland, T. Hwa, J. Kondev, R. Phillips,
  Transcriptional regulation by the numbers: models,
  Current Opinion in Genetics & Development 15, 116 (2005). [PDF]

• L. Bintu, N.E. Buchler, H.G. Garcia, U. Gerland, T. Hwa, J. Kondev, R. Phillips,
  Transcriptional regulation by the numbers: applications,
  Current Opinion in Genetics & Development 15, 125 (2005). [PDF]

• P. Pierobon, A. Parmeggiani, F. von Oppen, E. Frey,
  Dynamic correlation functions and Boltzmann Langevin approach for driven one dimensional lattice gas,
  Phys. Rev. E 72, 036123 (2005). [arXiv:cond-mat/0503360]

• O. Hallatschek, E. Frey, K. Kroy,
  Propagation and Relaxation of Tension in Stiff Polymers,
  Phys. Rev. Lett. 94, 077804 (2005). [arXiv:cond-mat/0405367]

• P. Benetatos, T. Munk, E. Frey,
  Bimodality in the transverse fluctuations of a grafted semiflexible polymer and the diffusion-convection analogue: an effective-medium approach,
  Phys. Rev. E 72, 030801(R) (2005). [arXiv:cond-mat/0501546]

2004

• R. Neher, U. Gerland,
  Dynamics of force-induced DNA slippage,
  Phys. Rev. Lett. 93, 198102 (2004).

• U. Gerland, R. Bundschuh, T. Hwa,
  Translocation of structured polynucleotides through nanopores,
  Phys. Biol. 1, 19 (2004).

2003

• W. Peng, U. Gerland, T. Hwa, H. Levine,
  Dynamics of Competitive Evolution on a Smooth Landscape,
  Phys. Rev. Lett. 90, 088103 (2003).

• U. Gerland, R. Bundschuh, T. Hwa,
  Mechanically probing the folding pathway of single RNA molecules,
  Biophys. J. 84, 2831 (2003).

• N. E. Buchler, U. Gerland, T. Hwa,
  On schemes of combinatorial transcription logic,
  PNAS 100, 5136 (2003).

2002

• U. Gerland, T. Hwa,
  On the Selection and Evolution of Regulatory Binding Motifs,
  J. Mol. Evol. 55, 386 (2002).

• U. Gerland, D. Moroz, T. Hwa,
  Physical Constraints and Functional Characteristics of Transcription Factor-DNA Interaction,
  PNAS 99, 12015 (2002).

2001

• U. Gerland, R. Bundschuh, T. Hwa,
  Force-induced denaturation of RNA,
  Biophys. J. 81, 1324 (2001).